Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N16
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   204   1e-53
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    29   0.90 
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.8  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.6  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.8  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  204 bits (498), Expect = 1e-53
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 2/217 (0%)
 Frame = -1

Query: 730 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI--K 557
           A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G  VVK +R     +
Sbjct: 4   AKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKE 63

Query: 556 DAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGT 377
           +AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP T
Sbjct: 64  EAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPKT 123

Query: 376 PVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTI 197
           PV  +  ++   DMVL+MTVEPG GGQ FM   + KV++LR+ YP L++EVDGG+   T+
Sbjct: 124 PVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTV 183

Query: 196 NCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDA 86
           +  A+AGAN+IV+GTA+  +      I  LR++V  A
Sbjct: 184 DAAADAGANVIVAGTAVFHAQSPEEVISGLRNSVMKA 220


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 325 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG 218
           + + PG G  ++M+  MAKV +Y R+N   + I+ DG
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADG 152


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 656 WSRLFTFRCNGWSVCT 609
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 482 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 583
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/44 (25%), Positives = 29/44 (65%)
 Frame = -1

Query: 208 PSTINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAINK 77
           PST +   ++ +    SGT++I ++D +A+ +++ S+  ++I++
Sbjct: 71  PSTSSSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQ 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,612
Number of Sequences: 5004
Number of extensions: 61389
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)