Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N16
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   253   8e-68
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    31   0.84 
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.     31   1.1  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     31   1.1  
U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  253 bits (620), Expect = 8e-68
 Identities = 125/218 (57%), Positives = 155/218 (71%), Gaps = 4/218 (1%)
 Frame = -1

Query: 718 PSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAFFE 542
           PSILNADL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHPVV+ LR  +  + FF+
Sbjct: 9   PSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLGAEPFFD 68

Query: 541 THMMVEKPEQWITPMADAGVNQYTFHIEPVKD---VIEVCRKVREHGMKVGVAIKPGTPV 371
            H+MV  P QW+ PMA AG +Q+TFH E V     V E+  K+R+ GMKVG+++KPGT V
Sbjct: 69  VHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSVKPGTSV 128

Query: 370 SEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINC 191
             + K+ +  D  LIMTVEPGFGGQKFMEN M KV+ +R  YP L I+VDGGV P  I  
Sbjct: 129 EHILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTPENIEI 188

Query: 190 CANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAINK 77
            A AGAN IVSGT II +ADQ+  +  +R+ V+ AI+K
Sbjct: 189 SAQAGANAIVSGTGIIKAADQSVAMTTIRNAVEAAISK 226


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 303 PNPGSTVIIKTMSDIEIYFSTSE-TGVPGFIATPTFIPCSLTFLH 434
           P+P +  II +M  +EI FS    TG   F   P+FI  S+ FLH
Sbjct: 5   PSPPAP-IITSMETVEIEFSAKVFTGFQLFYGVPSFIIMSVLFLH 48


>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical protein
            C09D8.1b protein.
          Length = 1467

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 1391 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 1445


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 2104 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 2158


>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical protein
            C09D8.1c protein.
          Length = 1216

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 1140 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 1194


>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical protein
            C09D8.1b protein.
          Length = 1467

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 1391 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 1445


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 2104 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 2158


>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
          Length = 1487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 1411 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 1465


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -1

Query: 220  GGVGPSTINCCANAGANMIVSGTAII-------GSADQAATIKLLRSTVQDAINK 77
            G  GP T++CC+ AG   +    +II          D   T+KLLR+  Q+ I +
Sbjct: 2124 GCTGPITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQE 2178


>U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical
           protein EGAP9.3 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 286 ENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANAGANMIVSGTAIIGSADQAATIKL 110
           +N++ K +YL   +P+  I  DGG+G       +  G  M ++ TAI  S D     KL
Sbjct: 51  KNEIDKQKYLL--FPMTAIVFDGGLGNQLFEVFSLLGLAMKLNRTAIFNSDDWILHSKL 107


>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 18  LEDFKPLECMILWCCRL*YYLFIASCTVLRSNFIVAAWSADPIMAVPETIMLAPALAQQF 197
           L +F     +++ CC   +  ++A C  LRS      W A+ ++ +  TI    AL   F
Sbjct: 112 LIEFTSYASIMIICC-FSFERWLAICHPLRSKIFSTLWRANVLIILAWTISFVCALPIAF 170

Query: 198 IV 203
           IV
Sbjct: 171 IV 172


>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 132 SADPIMAVPETIMLAPALAQQFIVDGPTPPSTSISSNG*FSLKYCTLAI*FS 287
           ++  I ++PETI   P+L   ++ D P    +S S N    LK   L   FS
Sbjct: 488 TSSAITSIPETITKLPSLTHLYLSDNPLDQLSSTSLNHLDGLKKIRLGGNFS 539


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 490 AGVNQYTFHIEPVKDVIEVCRKVRE 416
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 490 AGVNQYTFHIEPVKDVIEVCRKVRE 416
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,995
Number of Sequences: 27780
Number of extensions: 356761
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)