Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N15
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    31   0.12 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.5  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.8  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   7.8  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.8  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 604 FIKKCESDDSKCLKESAQATIPIFVEGIENLGV 506
           FI K  +  S+CL+  A   +PIF++G  NL +
Sbjct: 579 FIMKALASTSRCLRVVAAKVLPIFIKGPNNLDI 611


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 421  GLRNTVVKKIRRNKLKSKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQIS 242
            G  N +++++   KLK  L+     S  +   YE+   L++     K  L+ AL  V  +
Sbjct: 839  GSDNDLIRRLFSGKLKQTLNDA---SQGVRSNYEIFSHLIVDLFEEKQTLYDALDGVFET 895

Query: 241  VEADLGVET 215
            V  D+G ET
Sbjct: 896  VNIDMGSET 904


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 180 SFTVQC*TPSAPVSTP 227
           +FT+Q  TPS PVSTP
Sbjct: 113 NFTLQFTTPSGPVSTP 128


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 508 VEKLDPF-NIKYLDASSQLLKLILKDVTARGLRNTVVKKIRRNKLKSKLSITLLCSVDLE 332
           +E LD   N+ YLD S   +K I      +GL N    + R  ++++   +  L +++L 
Sbjct: 97  IENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELG 156

Query: 331 G 329
           G
Sbjct: 157 G 157


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 232  DLGVETGADGVQHWTVKDWNHNYQLKDQSTLELDNLFDGNDVRAQAAKQLXATSGNESS 56
            D GV+   D    W+ KDW      K   +++    FDG+DV          T G + S
Sbjct: 1809 DSGVQLEVDRSVSWSSKDWTPFNGKKLYGSIQ-SVQFDGHDVFFDGELNFEHTYGRDYS 1866


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 313 HPVRIPLQGQPNIEALWIVSTSICFAVSFSQQY 411
           HP+ I +       + W  +TSIC   +  +QY
Sbjct: 21  HPINILIDNPHQANSRWSCNTSICKPNNSEEQY 53


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 223 VETGADGVQHWTVKDWNHNYQLKDQSTLELDNLFDGNDVRAQAAKQ 86
           +E  ADGV+H  VKD     +L+  +  +  +L    + R+   KQ
Sbjct: 204 IEECADGVEHECVKDDLEEVKLEPYTNTDSTDLTTKEEARSFLLKQ 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,481
Number of Sequences: 5004
Number of extensions: 51887
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)