Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N15
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical
           protein F56C3.4 protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 682 CLA*VM--FKFLFLIFCSVYVTHSAVAPFIKKCESDDSKC 569
           C+A V+  F  L +++CS+ V  +AVAPFI         C
Sbjct: 122 CVAGVLGVFIVLLVVYCSLAVKTTAVAPFIHDASGSSEAC 161


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 454 LKLILKDVTARGLRNTVVKKIRRNKLKSKL 365
           LK+++KD+ A   RNT VK +   + KS L
Sbjct: 179 LKVLMKDLAAECKRNTEVKVLHPTRFKSHL 208


>U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical
           protein B0222.5 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 473 RCELSTSEIDFERCYCKRTQKYCCEKDTAKQIE 375
           +C++   + +  +C  K+ Q YC + +T ++I+
Sbjct: 108 KCDVGKGDFEPVQCDSKKNQCYCVDTNTGREIQ 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,952
Number of Sequences: 27780
Number of extensions: 287534
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)