Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N14
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    26   3.9  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   5.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   6.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.9  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   9.1  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   9.1  

>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 333 RTLLVFMYSHFKLIQIKSIITNVENVTGWLSFSLSLDKITIF 208
           R+++ F++    L Q         N++ ++SF+ SL  +TIF
Sbjct: 3   RSIISFLFFSVALCQPFLFQKRSSNISDFISFNASLPNVTIF 44


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 91  KRCFFLPIFNSDA-LEITSIAGSLSSLHLYTYILFNYHHLENRNFI 225
           K+ F L   +  A + I ++AG  +S+ +Y   L++Y+  ++ NF+
Sbjct: 306 KQKFMLCFLSMAAFISIFNVAGYQTSVPIYAKALYHYNPFQSGNFL 351


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   VPAPRVVPSHHXCHIRHKNNV 63
           VP P  +P H    ++H N V
Sbjct: 369 VPVPEPLPGHQWAEVKHDNTV 389


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 233 NEKLSQPVTFSTLVIIDLIWISLKWLYI 316
           N  LS+  +FS L+I+ LIWI +  +YI
Sbjct: 581 NHDLSKS-SFSGLIIVCLIWILVAAIYI 607


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 SIAGSLSSLHLYTYILFNYHHLENRNFI 225
           ++ G  +S+ +YT  L+NY   ++ NFI
Sbjct: 327 TVNGYQASISIYTGKLYNYDAFQSGNFI 354


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = -2

Query: 253 WLA-EFFVKSR*NYDFLG-DGN*IKYMYINEVTT------MNPLWKLSRARRC*RLAKKS 98
           WL  EFF K    Y  L  DGN + Y +     T       + LW L  +R C +L    
Sbjct: 20  WLQPEFFSKY---YPVLAVDGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKTSP 76

Query: 97  IVLWSN 80
           IV++ N
Sbjct: 77  IVVFDN 82


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 330 TLLVFMYSHFKLIQIKSIITNVENVTGWLSFSLSLDKITIF 208
           +++ F++    L Q         NV+ ++SF+ SL  +TIF
Sbjct: 4   SIISFLFFSVALCQPLLFQKRSSNVSDFISFNASLPNVTIF 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,092
Number of Sequences: 5004
Number of extensions: 39902
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)