Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N13
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.99 
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   2.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   5.3  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.2  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.2  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    25   9.2  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 246 TPTSNIPQNMTSTKYKKNVNHTWAKKPTPLYMIITSLIMVTFSAFLF 386
           T T  IP+NMT T   ++  H W  +     +   S ++ +    LF
Sbjct: 427 TVTEKIPKNMTGTNIAQHKWHQWVDREASKRIAFFSFVLDSQHVILF 473


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 255 SNIPQNMTSTKYKKNVNHTWAKKPTPLY 338
           SN PQN  S    + VNH     P P+Y
Sbjct: 121 SNTPQNEASPAATEAVNHERPASPPPVY 148


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 246 TPTSNIPQNMTSTKYKKNVN 305
           T  +N+P N++ T+YKK  N
Sbjct: 538 TSLANLPSNLSDTQYKKLYN 557


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 490 TRCCFFVPLRYGIMIFGYLNLLFA 419
           +RCCF + L + I + G+ + + A
Sbjct: 573 SRCCFRLGLLFSIFVVGFSSFILA 596


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 270 NMTSTKYKKNVNHTWAKKPTPLYMIITSLIMVTFSAFLF 386
           +M+   YK+ + +     P  +  IIT LI +    F+F
Sbjct: 194 SMSYGLYKRELENNLTMSPWRILFIITGLITIINGVFIF 232


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 350 CYYHIQRRGFLCPCMV 303
           CY H+Q RGF  P  V
Sbjct: 51  CYNHLQDRGFATPISV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,054
Number of Sequences: 5004
Number of extensions: 41367
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)