Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N13
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28737-6|AAL02486.1| 566|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 29 2.1
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 29 2.1
Z83216-1|CAB62780.1| 238|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical... 28 4.8
Z81116-1|CAB03301.1| 347|Caenorhabditis elegans Hypothetical pr... 27 8.3
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 27 8.3
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 27 8.3
AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b prote... 27 8.3
>U28737-6|AAL02486.1| 566|Caenorhabditis elegans Hypothetical
protein F14B8.7 protein.
Length = 566
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -2
Query: 466 LRYGIMIFGYLNLLFAGFICGAYIHYLNKNAENVTMISDVIIIYKGVGFFAHVWLTF 296
LR G ++FG + +++ I + + N ++ISDV+ + V F +W +
Sbjct: 145 LRLGCVVFGIIGVVYYLLIFVICLLGWSSNEGECSVISDVLNVMAAVFIFVQMWFVY 201
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 434 KFAVCWFHMRCIHTLFEQECRECY 363
K A+C F MR I T F+Q +CY
Sbjct: 337 KSAICMFTMREIETSFKQNIMKCY 360
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 434 KFAVCWFHMRCIHTLFEQECRECY 363
K A+C F MR I T F+Q +CY
Sbjct: 343 KSAICMFTMREIETSFKQNIMKCY 366
>Z83216-1|CAB62780.1| 238|Caenorhabditis elegans Hypothetical
protein C08F11.1 protein.
Length = 238
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 179 YRHFYNRYFNKYSYAIHSFGLCYYILWICDTNIFDSPS 66
Y +F NRY N +SY L Y++L + ++FD S
Sbjct: 132 YAYFDNRYINSFSYT-----LAYWMLTVLMKDMFDESS 164
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 473 CAAPIRHYDIWLFKFAVCWFHMRCIHTL--FEQECRECYHDK*CYYHI 336
C A I ++ A C + CI+ FE +C+ YH C YH+
Sbjct: 109 CEADIDECSVYNGTTAGCQNNGTCINNRGGFECQCQSGYHGSLCQYHM 156
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 473 CAAPIRHYDIWLFKFAVCWFHMRCIHTL--FEQECRECYHDK*CYYHI 336
C A I ++ A C + CI+ FE +C+ YH C YH+
Sbjct: 109 CEADIDECSVYNGTTAGCQNNGTCINNRGGFECQCQSGYHGSLCQYHM 156
>AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical
protein Y53F4B.28 protein.
Length = 860
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 400 YIHYLNKNAENVTMISDVIIIYKGVGFFAHVWLTFFLYFVE 278
Y+H N N + V++IS ++ I V + AHV +F + E
Sbjct: 717 YLHLWNVNLDAVSLISMLMSIGFSVDYSAHVCYHYFAHVHE 757
>Z81116-1|CAB03301.1| 347|Caenorhabditis elegans Hypothetical
protein T06C12.1 protein.
Length = 347
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 337 YKGVGFFAH-VWLTFFLYFVEVIFCGI 260
+KG+ F + ++L FF YFV +++CGI
Sbjct: 193 WKGIYFLSTGIFLVFFHYFV-ILYCGI 218
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 401 IHTLFEQECRECYHDK*CYYHIQRRGFLCPC 309
+ T FE +C EC H + C Y + R +C C
Sbjct: 576 VMTAFEGKCDECLHVQ-CRYGEECRSGVCVC 605
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 401 IHTLFEQECRECYHDK*CYYHIQRRGFLCPC 309
+ T FE +C EC H + C Y + R +C C
Sbjct: 584 VMTAFEGKCDECLHVQ-CRYGEECRSGVCVC 613
>AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b protein
protein 50 protein.
Length = 532
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 391 YLNKNAENVTMISDVIIIYKGVGFFAHVWLTFFLYFVEV 275
YL KN EN+ +++ I + F A WL FLY V
Sbjct: 380 YLFKN-ENIAEYAELDIKFSAPHFDAKSWLKHFLYIFHV 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,333
Number of Sequences: 27780
Number of extensions: 227801
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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