Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N12
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 36 0.008
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 33 0.032
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.30
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 26 4.9
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 4.9
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 6.4
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 6.4
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 8.5
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 8.5
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +2
Query: 395 QCFKCFKFNHSAKVCRSKQMCSYC-AGDHHYKECV--SDILVCINCG-GGHLAVSRDCP 559
+C+ C + H A+ C +C C H EC C CG GHL RDCP
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV--RDCP 74
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 392 IQCFKCFKFNHSAKVCRSKQMCSYCAG-DHHYKEC--VSDILVCINCG-GGHLAVSRDCP 559
+ C+ C + H A+ C C C H EC SD +C C GH+AV+ P
Sbjct: 116 MNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 395 QCFKCFKFNHSAKVCRSK-QMCSYCAGDHHYKECVSDILVCINCGG-GHLAVSRDCP*IF 568
+C+KC + H A+ CR+ Q G H + C CG GH A RDC +
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSN------MNCYACGSYGHQA--RDCT-MG 134
Query: 569 TNSCSCSK 592
SC K
Sbjct: 135 VKCYSCGK 142
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 33.5 bits (73), Expect = 0.032
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 570 QTAAVVLKTKNANLSLLCAYSPPRGGRFQYK 662
+TAA + + KNAN S C +PP GRF +
Sbjct: 142 ETAAPIKQPKNANSSSTCTRTPPTSGRFSIR 172
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.30
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 32 SRINASQIGVNFQKAADANSFIK--LDNFLSKHKFRAFIPAHLVEKVGVIKFVPTDLSNE 205
SR++ +I +F K S + LD+F K K + F P + G +KFV + S E
Sbjct: 26 SRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFVNAE-SIE 84
Query: 206 DIYKN 220
++ K+
Sbjct: 85 EVLKD 89
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 725 CIQVASQEYWFWQFIDNSF*SFV 657
C VA+ WFW F+ + F F+
Sbjct: 373 CAAVATSANWFWNFLISFFTPFI 395
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +2
Query: 149 HLVEKVGVIKFVPTDLSN--EDIYKNISSDAEIISIKRF-MKRNADKKLMPMSSVAITFS 319
H + KV + D+++ +D+ I D I + KR + + D +++P+S + ++
Sbjct: 1053 HKMNKVMLSVLEQLDVASIQDDVLIAIRGDMRIPTSKREELSKQLDGEIIPLSDLFNNYA 1112
Query: 320 TTTLPRYVYLNLFRCEVQTYISPLIQCFK 406
+ L++F+C I+ ++ C++
Sbjct: 1113 DPLGYGEICLSIFQCADYRGINEILNCWE 1141
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 392 IQCFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCI 517
I CF+C K SA V +S C YC + + +C++ L +
Sbjct: 407 ILCFRCHK---SALVSQSILACDYC-NSYWHPDCLNPPLATL 444
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 725 CIQVASQEYWFWQFIDNSF*SFV 657
C VA+ WFW F+ + F F+
Sbjct: 405 CAAVATASNWFWNFMISFFTPFI 427
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 80 DANSFIKLDNFLSKHKFRAFIPAHLVEKVGVI 175
D+N F+K+ +F S F+ A +VE GV+
Sbjct: 434 DSNCFVKIIDFGSAVVFKYPFEADIVEATGVV 465
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 41 NASQIGVNFQKAADANSFIKLDNFLSKHKFRAFIPAHLVEKVGVIKF-VPTDLSNEDIYK 217
N + G+N Q + + + L +F + ++P+ ++ GV+ T++++ D
Sbjct: 157 NITVAGINVQDSLSYSHYQALPDFQFGITLKEYVPSSMLPYKGVLGLAASTEINSIDYSD 216
Query: 218 NISSDAEIISIKRFMKRN 271
+ISS + +++ +K +
Sbjct: 217 SISSFSPPTFLEQLVKED 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,577
Number of Sequences: 5004
Number of extensions: 66147
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -