Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N12
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1257 - 32155935-32156526,32156655-32157067 40 0.002
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179... 38 0.008
10_05_0023 + 8171023-8171782,8172658-8172950 38 0.008
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 36 0.034
07_01_1134 + 10614565-10615821 36 0.034
09_02_0546 - 10454404-10455687 34 0.10
10_02_0188 - 6473353-6473432,6473619-6474816 34 0.14
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 33 0.18
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548 33 0.24
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 31 0.72
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 29 2.9
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 29 3.9
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 29 5.1
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 6.7
02_02_0374 + 9538478-9540385 28 6.7
03_06_0481 - 34222012-34222287,34222371-34222439 28 8.9
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 28 8.9
>04_04_1257 - 32155935-32156526,32156655-32157067
Length = 334
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A +C + +C+YC DH EC + + C C G + V +DC
Sbjct: 170 CIRCGEIGHIASMCLT--LCAYCEEDHPPGECPTRKVTCFLCEGTN-HVPKDC 219
>12_02_0556 +
20415683-20416841,20417563-20417726,20417837-20417926,
20427889-20429145
Length = 889
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A +C + +C++C DH EC++ + C C G + V +DC
Sbjct: 725 CPRCGEIGHIASMCLT--LCTHCEEDHPPGECLTRKVTCFLCEGTN-HVPKDC 774
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGG-GHLA 541
C +C + H A +C + +C++C DH EC + + C C G GH A
Sbjct: 213 CTRCGEIGHVASMCLT--LCTHCEEDHPPGECPTRKVTCFLCEGMGHFA 259
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCG-GGHLAVSRDC 556
C C H A C SK +C C H + +C NCG GH+A R+C
Sbjct: 60 CHACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNEGICRNCGKSGHIA--REC 111
>07_01_1134 + 10614565-10615821
Length = 418
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A +C + +C YC DH +C + + C C G + V +DC
Sbjct: 254 CPRCGEIGHVASLCFT--LCPYCEEDHPPGKCPTRKVTCFLCEGTN-HVPKDC 303
>09_02_0546 - 10454404-10455687
Length = 427
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A C S C +C DH C + + C C G V +DC
Sbjct: 203 CSRCGEIGHVASSCAST--CVHCEEDHPPDRCPTSRITCFFCEGTD-HVPKDC 252
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A C + +C +C DH C + + C C G V +DC
Sbjct: 193 CSRCGEIGHVASSCAT--ICVHCEEDHPPDRCPTSRITCFFCEGTD-HVPKDC 242
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A C + C +C DH C + + C C G V +DC
Sbjct: 193 CSRCGEIGHVASSCATT--CVHCEEDHPSDRCPTSRITCFFCEGTD-HVPKDC 242
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINC 523
C +C + H A +C + +C++C DH EC + + C C
Sbjct: 594 CTRCGEIGHVASMCLT--LCTHCEEDHPPGECPTRKVTCFLC 633
>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
Length = 529
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHHYKECVSDILVCINCGGGHLAVSRDC 556
C +C + H A +C + +C +C DH EC + + C C G + V DC
Sbjct: 365 CPRCGEIGHVAIMCFT--LCPHCEEDHPPGECPTRKVTCFLCEGTN-HVPTDC 414
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 395 QCFKCFKFNHSAKVCRSKQMCSYCAGDHH 481
+CF+CF +H A CR C C H
Sbjct: 261 KCFRCFASDHQAAACRDPIRCYTCRRSGH 289
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 398 CFKCFKFNHSAKVCRSKQMCSYCAGDHH 481
CF+C H + C SK C C + H
Sbjct: 274 CFRCLTKGHIMQDCSSKFYCEICESEDH 301
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 558 HEYLQTAAVVLKTKNANLSLLCAYSPPRGGRFQYKTLKTIINKLP 692
H LQ ++LKT NAN S +C S +G + L+ ++ P
Sbjct: 538 HHRLQNTTILLKTLNANTSQVC-NSVIQGNGLSVQQLEALVKMKP 581
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 326 TLPRYVYLNLFRCEVQTYISPLI 394
TLPR +LNL+ C +Q I P I
Sbjct: 300 TLPRIQFLNLYNCRLQGSIPPSI 322
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +2
Query: 155 VEKVGVIKF----VPTDLSNEDIYKNISSDAE 238
++ VG++K V TDLSNED Y+ SS AE
Sbjct: 1307 IDHVGIVKQMLSKVCTDLSNEDAYRRESSLAE 1338
>02_02_0374 + 9538478-9540385
Length = 635
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = -3
Query: 259 KPLNRYDFSIATNIFIDVFVG*VCRHKFNHTHLLY*VRRYKGAEFVLAEKVVKFDKAISI 80
+P N D+ ++ +I + + + H ++ H++ + +G + +++ KVV+F +A +
Sbjct: 432 RPWNPSDYKVSPDIIMLITSSVL--HPYHLDHIVS-LTYPEGLDTLVSHKVVQFGRADTA 488
Query: 79 CSFLEIHTDLR 47
CS HT +R
Sbjct: 489 CSHQNRHTIVR 499
>03_06_0481 - 34222012-34222287,34222371-34222439
Length = 114
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 392 IQCFKCFKFNHSAKVCRSKQMCSYCAGDHHYK-ECVS 499
I C C K H ++ C + +C C G H EC S
Sbjct: 67 ITCRLCGKPGHISRNCMTTMICGTCGGRGHMSYECPS 103
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 155 VEKVGVIKFVPTDLSNEDIYKNISSDAEIISIKRFMK 265
+E + VI FV L N DI+ SDAE + IK+ ++
Sbjct: 380 IEPLPVIDFV-AQLLNSDIHSRPLSDAERVKIKKALR 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,033
Number of Sequences: 37544
Number of extensions: 407458
Number of successful extensions: 905
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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