Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N10
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   9.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 33  GSYLNLFLVMVII*KEVQNNRQYYLRV*NTFLFDVT-NLCTKEC 161
           GS++  ++  VI  +E +   + Y     T+LFD+  N   ++C
Sbjct: 519 GSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQC 562


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 185 NYKYSCYN*RR*RHKGVTNRNS 250
           NYKYS YN     +    N N+
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNN 342


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 345 PVTRERESTHETD 307
           PVT +R+ T ET+
Sbjct: 622 PVTTKRDGTQETE 634


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 321 THETDYPLHLWTRISCELLNLI 256
           T   DYP   W  ++ E  NLI
Sbjct: 126 TGSYDYPSPEWDTVTPEAKNLI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,279
Number of Sequences: 438
Number of extensions: 1435
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)