Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N05
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   5.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   6.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.7  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   8.9  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          25   8.9  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 488  FNSSSNRLLIQF*SHKINSTHSLCPNVWASNF 583
            F ++SN +  +F S+  NST SL P V  +NF
Sbjct: 3885 FRNTSNTMTSRFVSNDFNSTISLQPVVQFNNF 3916


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 324 EPARRIEGGKLPFGGEIFPDSRSCSSCISFTLHFSLFFNVMIKF 455
           +P  +     +P    I P     S+   F L  SLFF + +KF
Sbjct: 311 QPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKF 354


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 154  KSVPI-FSLTLHWNGTHHAGINDDIRDIERVV 62
            + VP+ ++L   WN     G+N  ++DIE  +
Sbjct: 1265 EKVPVLYTLDFIWNTLELNGLNHSVKDIEETI 1296


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 199  SAKLVALVALRSDYPKSVPIFSLTLHWNGTHHAGIN 92
            SA+L+ LV  R+D      I  L  HW     AG N
Sbjct: 2127 SAELIKLVYQRADNENFNLIRQLLSHWTSVEKAGKN 2162


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 304 VGWPEYSQAPSTAFLVTEGLVSANDLLYRAIITRQSAKLVALVALRSDYPKS 149
           + W EYS+ PS    V   L+    + +   I+ +   +  + A  S  P S
Sbjct: 571 INWNEYSELPSLDRFVLPKLLPGKPIEFTPPISVEPTSIKTIAAEESSEPTS 622


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 407 YA*ATRSRIRKDFTTKRKLASFYASSRFFDSVAVCW 300
           YA   + R+++DF T+  + +F  S++      V W
Sbjct: 29  YAICVKDRVQRDFITENDIVTFNLSNQSVTKDLVNW 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,417
Number of Sequences: 5004
Number of extensions: 46296
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)