Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N05
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 33 0.18
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 33 0.18
04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822 29 3.0
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272... 29 4.0
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 29 4.0
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 29 4.0
08_02_0621 - 19397038-19397076,19397305-19397593,19397676-193978... 28 6.9
06_01_0137 - 1045301-1047601 28 6.9
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562... 27 9.2
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 9.2
08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567 27 9.2
07_03_0677 + 20620873-20621401,20621555-20621580,20621659-206221... 27 9.2
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220... 27 9.2
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 473 EIRTRFNSSSNRLLIQF*SHKINSTHSLCPNVWASNFWYEMXKAFR 610
++R +N + L+ H+ N+ H C N W S W ++ K FR
Sbjct: 172 QLRASWNPGLEKALVDL-LHEHNNRHYRCQNGWTSEAWNKVVKEFR 216
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = -2
Query: 595 HFIPEIGRPYVWAQRMCGIDFMTS---ELNEQSVR--RAVEPCPNLSVATVENFIMTLKK 431
+F + RPY WAQ + GIDF+ + + S R R+ + L++ +N T+ +
Sbjct: 413 NFSEKDSRPYKWAQHLAGIDFLPEVPLSVGDDSNRASRSADLSSGLALYRQQNRAQTILQ 472
Query: 430 RLKCR 416
R++ R
Sbjct: 473 RIRSR 477
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 190 LVALVALRSDYPKSVPIFSLTLHWNGTHHAGINDDIRDIERVVNTEI 50
L A +A+ +YP P F+L L T ++D+R +E VN I
Sbjct: 677 LEAKIAISMEYPVRPPFFTLQLLSGKTEALKWHNDLRAMEAEVNLHI 723
>04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822
Length = 270
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 577 GRPYVWAQRMCGIDFMTSELNEQSVRRA--VEPCPNLSV 467
G+P++W R C ++ EL ++ R V CP L V
Sbjct: 106 GKPFLWVVRSCNEHKLSEELRDKCKERGLIVSWCPQLEV 144
>06_01_0379 -
2723365-2723490,2724558-2724647,2724813-2725046,
2725174-2725470
Length = 248
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 500 SNRLLIQF*SHKINSTHSLCPNVWASN---FWYEMXKAFRYTCI 622
S R LI + + N HS+CP W+++ F+ M +TCI
Sbjct: 165 SKRHLIWYGFERKNGVHSVCPAYWSAHRRWFFMSMICLNPFTCI 208
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 577 GRPYVWAQRMCGIDFMTSELNEQSVRRA--VEPCPNLSV 467
G+P++W R C ++ EL ++ R V CP L V
Sbjct: 332 GKPFLWVVRSCDEHKLSEELRDKCKERGLIVSWCPQLEV 370
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 556 QRMCGIDFMTSELNEQSVRRAVEPCPNLSVATVENFIMTLKKRLKCRVKLMHELQDLESG 377
+++ GIDF + E NLS T+E + + +++ M +LQD S
Sbjct: 175 EKVLGIDFKQTVYEVHPSLDEAEGSKNLSNTTIERLAAAANRLREMKIQRMQKLQDFASS 234
Query: 376 KI 371
+
Sbjct: 235 ML 236
>08_02_0621 -
19397038-19397076,19397305-19397593,19397676-19397824,
19399030-19399839,19399926-19400105,19400450-19400674,
19400750-19401157
Length = 699
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 620 CRYIGKLXSFHTRNWTPIRLGTKNVW 543
C Y+ + +WTPI+LG W
Sbjct: 606 CHYLNSRIDKNAYDWTPIQLGIDEAW 631
>06_01_0137 - 1045301-1047601
Length = 766
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -2
Query: 280 APSTAFLVTEGLVSANDLLYRAIITRQSAKLVALVALRSDYPKSVPIFS 134
A S A L+ L+ A DLL A R +A+LV V+L P + +FS
Sbjct: 40 ATSLAMLLLAALLLAFDLLAGAATLRPAARLVLSVSLALFLPVTSYLFS 88
>12_02_0221 -
15855479-15855517,15855745-15856033,15856118-15856288,
15856367-15856572
Length = 234
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -1
Query: 620 CRYIGKLXSFHTRNWTPIRLGTKNVW 543
C Y+ + NWTPI+L W
Sbjct: 141 CHYLNSRIDKNAYNWTPIQLAIDEAW 166
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 145 PIFSLTLHWNGTHHAGINDDIRDI 74
PI +L + W G AG DD+R +
Sbjct: 186 PIATLEIRWRGVGEAGSGDDLRGL 209
>08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567
Length = 412
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 187 VALVALRSDYPKSVPIFSLTLHWNG 113
VA + L +P+ +P+FS+ LH +G
Sbjct: 244 VAELILEKRFPRGIPMFSMPLHCDG 268
>07_03_0677 +
20620873-20621401,20621555-20621580,20621659-20622105,
20622193-20623079,20623158-20623328,20623411-20623603,
20623785-20623823,20623929-20623967
Length = 776
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -1
Query: 620 CRYIGKLXSFHTRNWTPIRLGTKNVW 543
C Y+ + NWTPI+L W
Sbjct: 702 CHYLNSRIDKNAYNWTPIQLAIDEAW 727
>06_03_0098 -
16621473-16621511,16621617-16621655,16621741-16622029,
16622112-16622282,16622361-16623244,16623332-16623775,
16623854-16624561
Length = 857
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 620 CRYIGKLXSFHTRNWTPIRLGTKNVW 543
C Y+ +T +WTPI+L W
Sbjct: 751 CHYLNSRIDKNTYDWTPIQLAIDEAW 776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,204
Number of Sequences: 37544
Number of extensions: 286577
Number of successful extensions: 723
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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