Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N05
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 30 1.5
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL032630-2|CAA21559.1| 217|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 6.2
AC087232-5|ABA00173.1| 271|Caenorhabditis elegans Hypothetical ... 27 8.2
AC087232-4|AAK09080.2| 637|Caenorhabditis elegans Hypothetical ... 27 8.2
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/117 (21%), Positives = 48/117 (41%)
Frame = -2
Query: 532 MTSELNEQSVRRAVEPCPNLSVATVENFIMTLKKRLKCRVKLMHELQDLESGKISPPKGS 353
MT+++ + +RR V CP LS + + T+ L + H + +E PK
Sbjct: 572 MTTDIASECIRRLVAVCPKLSPSLQTERLRTIVNALD--IYFPHRNEPVEM-LTDIPKVE 628
Query: 352 LPPSMRLAGSLTQWQSVGWPEYSQAPSTAFLVTEGLVSANDLLYRAIITRQSAKLVA 182
+ + G W + E+ S ++ E +A+ L+ A + +LV+
Sbjct: 629 METVKAIYGERPLWNEIDENEHQSVSSDGWITVER--AAHHALFGASAPYRGMQLVS 683
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/117 (21%), Positives = 48/117 (41%)
Frame = -2
Query: 532 MTSELNEQSVRRAVEPCPNLSVATVENFIMTLKKRLKCRVKLMHELQDLESGKISPPKGS 353
MT+++ + +RR V CP LS + + T+ L + H + +E PK
Sbjct: 570 MTTDIASECIRRLVAVCPKLSPSLQTERLRTIVNALD--IYFPHRNEPVEM-LTDIPKVE 626
Query: 352 LPPSMRLAGSLTQWQSVGWPEYSQAPSTAFLVTEGLVSANDLLYRAIITRQSAKLVA 182
+ + G W + E+ S ++ E +A+ L+ A + +LV+
Sbjct: 627 METVKAIYGERPLWNEIDENEHQSVSSDGWITVER--AAHHALFGASAPYRGMQLVS 681
>Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical
protein R10E8.4 protein.
Length = 534
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 559 AQRMCGIDFMTSELNE-QSVRRAVEPCPNLSVATVENFIMTL 437
A+R+C DFM S L + +V C +LS+ T + + TL
Sbjct: 73 AERICSGDFMRSSLEHFRQFLSSVHVCSSLSITTGSSSLNTL 114
>AL032630-2|CAA21559.1| 217|Caenorhabditis elegans Hypothetical
protein Y62H9A.2 protein.
Length = 217
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 492 TALLTDCSFNSEVIKSIPHILC 557
TAL +C E +KS+ HILC
Sbjct: 62 TALRAECELTIERVKSLDHILC 83
>Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical
protein F36G9.12 protein.
Length = 707
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -1
Query: 350 ASFYASSRFFDSVAVCWLA*VQ----SGPINSF 264
A++Y SRFF ++AV W+ GPIN+F
Sbjct: 562 ATYYNFSRFFWAIAVSWVIVANHMGWGGPINNF 594
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 235 NDLLYRAIITRQSAKLVALVALRSDYPKSVPIFSLTLHWNG 113
+++LY +T + +VA S YP P+ +TL ++G
Sbjct: 363 DEMLYENSVTITAETRATIVAFPSTYPDFTPLLRITLVFDG 403
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 517 NEQSVRRAVE-PCPNLSVATVENFIMTLKKRLKCRVKL 407
N +R A E P P+LS A+ E F L K KC+ L
Sbjct: 185 NHARLRVAQEVPVPDLSQASEEEFYTNLAKEWKCQATL 222
>AC087232-5|ABA00173.1| 271|Caenorhabditis elegans Hypothetical
protein Y92H12BR.3b protein.
Length = 271
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 361 KGSLPPSMRLAGSLTQWQSVGWPEYSQAPSTAFLVTE 251
K SLP S +++GS+T W ++ S F V E
Sbjct: 41 KISLPESYKISGSMTDWMKASTSLLVESASKEFRVLE 77
>AC087232-4|AAK09080.2| 637|Caenorhabditis elegans Hypothetical
protein Y92H12BR.3a protein.
Length = 637
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 361 KGSLPPSMRLAGSLTQWQSVGWPEYSQAPSTAFLVTE 251
K SLP S +++GS+T W ++ S F V E
Sbjct: 41 KISLPESYKISGSMTDWMKASTSLLVESASKEFRVLE 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,934
Number of Sequences: 27780
Number of extensions: 259421
Number of successful extensions: 540
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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