Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N02
         (437 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   187   1e-49
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   2.1  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   2.7  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           22   8.3  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   8.3  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  187 bits (456), Expect = 1e-49
 Identities = 88/132 (66%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
 Frame = -1

Query: 407 MADQTE-KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 231
           MADQ   +AFQKQ  + LNRK   ++K +R H ++GLGFKTP+EAI GTYIDKKCPFTG+
Sbjct: 1   MADQQNIRAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGH 60

Query: 230 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 51
           +SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEKR+RNM +HLSPCFRDVE GDI
Sbjct: 61  ISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRNRNMRLHLSPCFRDVEAGDI 118

Query: 50  VTIGECRPLAKT 15
           VT+GECRPL+KT
Sbjct: 119 VTLGECRPLSKT 130


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 204  GEDAAADRNVTSEGTLLVNVGT 269
            GED   D+   S+GTLL  +GT
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGT 1288


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 329 PSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKSNSF 436
           P +  H  C+G+RW   +T    +  F L +K  +F
Sbjct: 234 PINRQHTPCAGRRW---KTKQFRENSFLLALKDVNF 266


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 327 HASP*ECWFRLQNSQRGD*GYLH 259
           H  P EC   + +S     GYLH
Sbjct: 82  HYEPMECHSAVNSSSNSSTGYLH 104


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 332 SSSCHLSCSGKRWPVS 379
           +SSC L  +G RW VS
Sbjct: 447 ASSCFLPEAGARWDVS 462


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,522
Number of Sequences: 2352
Number of extensions: 9212
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)