Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N01
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 32 0.083
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 31 0.19
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 28 1.4
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 2.4
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 5.5
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 7.2
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 7.2
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.6
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 25 9.6
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 32.3 bits (70), Expect = 0.083
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 255 DMVSKIYAFCGLKFSCLKGFASGVTLIFPVASDTSERI 368
++ S IYA+CGL CL + + V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = -2
Query: 631 LDLDNDIYVFVGEKAKNVEKLKAIS--FANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFT 458
L+L+N ++ + + ++K N+ + + D ++K D ++ F T
Sbjct: 8 LELENAVFGNINNFSSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLE-DAELFMFDT 66
Query: 457 ALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 344
G KD VP + GD+ E EASN I S D+
Sbjct: 67 GSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -2
Query: 286 PQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTR--VLQNTEP 113
P A I+D W GK + +K A + + K + W Q+TR VLQ +
Sbjct: 288 PVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDD 347
Query: 112 A-AFKQYXFT 86
+ FK +T
Sbjct: 348 SPGFKPSYYT 357
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 229 KQSTANEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQYXFTWRDF 74
K A++ S + K ++ +K+ W + + L+N EPA+ ++Y W DF
Sbjct: 170 KFEEASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDF 224
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 427 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKPFKQ 299
P+E D++E ++ E+ + L E+S + ++ P FK+
Sbjct: 34 PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -2
Query: 619 NDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGV 440
+D Y EK K ++ L A+SF + + G I + +++++ F G+
Sbjct: 202 HDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGENIEMEDFVLYESLGL 261
Query: 439 KDLV 428
KDLV
Sbjct: 262 KDLV 265
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 338 KDQSDATSEAFQARELESTKRVYFGHHIWQHLRLDREAV 222
K+ ++A+ F A ELE + Y HIWQ+ L+ + V
Sbjct: 33 KESTEASINMFLA-ELERLQLEYGKEHIWQNEELNLQRV 70
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 424 DESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKP 308
D+S GDD++ A + ++ + D KI PL P
Sbjct: 562 DDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSP 600
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 694 DVRVRQVDPQIASMNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 524
D R+ QV+ ++ +G + N+ V +G + KNV KL+ +S ++ D+H
Sbjct: 14 DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,782
Number of Sequences: 5004
Number of extensions: 54827
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -