Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N01
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 95 6e-20
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 88 7e-18
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 66 4e-11
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 62 4e-10
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 31 1.1
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 31 1.1
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 31 1.4
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 29 3.3
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69... 28 7.6
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 95.1 bits (226), Expect = 6e-20
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 2/243 (0%)
Frame = -2
Query: 805 YFQTPLTYLEGGNPSGFNHVVTNAGAQKRMXQVKGKRDVRVRQVDPQIASMNKGDCFVLD 626
YF+ + LEGG SGF + + R+ KGKR +RV++V +S+N D F+LD
Sbjct: 117 YFKPCIIPLEGGFASGFKTPEEDK-FETRLYICKGKRAIRVKEVPFARSSLNHDDVFILD 175
Query: 625 LDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVD--KYSSDVDVQKFFTAL 452
+ IY F G + E+ KA+ +++ H+G V IVD K ++ D +F+
Sbjct: 176 TEKKIYQFNGANSNIQERAKALEAIQHLKETYHNGVCDVAIVDDGKLQAESDSGEFWVLF 235
Query: 451 GSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKPFKQENLSPQNAY 272
G + ++ DD E L +++ K++ T L K + N +
Sbjct: 236 GGFAP--IGKKAICDDDVVLETTAPK---LYSINNGQLKLEDTVLTKSILENN----KCF 286
Query: 271 ILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYX 92
++D ++++W+G+ + E+ A +E + +N P +VTRV+Q E FK
Sbjct: 287 LVD-CGSDLFIWVGRLTQVEERKAASAAVEEFIATQNRPKTTRVTRVIQGYENHTFKSKF 345
Query: 91 FTW 83
+W
Sbjct: 346 ESW 348
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 88.2 bits (209), Expect = 7e-18
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 3/244 (1%)
Frame = -2
Query: 805 YFQTPLTYLEGGNPSGFNHVVTNAGAQ-KRMXQVKGKRDVRVRQVDPQIASMNKGDCFVL 629
YF+ + EGG SGF H N R+ +GK V V++V +S+N D F+L
Sbjct: 170 YFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFIL 229
Query: 628 DLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVD--KYSSDVDVQKFFTA 455
D + I+ F G + E+ KA+ ++D +H G+ V V+ K +D D +F+
Sbjct: 230 DTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGL 289
Query: 454 LGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKPFKQENLSPQNA 275
G P D + + S+ ++ T + L + E L
Sbjct: 290 FGG----FAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTR----ELLDSTKC 341
Query: 274 YILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQY 95
Y+LD S IYVW+G+++ E+ +A + A+ELL N P + R+++ E F+
Sbjct: 342 YLLDCGS-EIYVWMGRETPLEERKRAGSAAEELLREVNRPK-SHIVRLMEGFETVIFRSK 399
Query: 94 XFTW 83
W
Sbjct: 400 FSKW 403
Score = 49.2 bits (112), Expect = 4e-06
Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 4/214 (1%)
Frame = -2
Query: 712 QVKGKRDVRVRQVDPQIASMNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQ 533
Q G +++ QVD S+N C+VL + ++ ++G + ++++ A R
Sbjct: 584 QGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELA------ERQL 637
Query: 532 DHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEV 353
D + K S+ D +F+ L GVK P Q+ +++ S+ L
Sbjct: 638 DVIKPNLQSRMLKEGSEYD--QFWKLL--GVKSEYP-------SQKIAKDQESDPHLFSC 686
Query: 352 SDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELL 173
+ + G +KV + F Q++L ++ +ILD S ++VW+G++ ++QA++ ++ L
Sbjct: 687 TFSKGVLKVREIFN-FTQDDLMTEDVFILDCHS-CVFVWVGQRVDTKMRAQALSVGEKFL 744
Query: 172 N----AKNYPSWVQVTRVLQNTEPAAFKQYXFTW 83
+N V + + +EP F ++ FTW
Sbjct: 745 ELDILMENSSQETPVYVITEGSEPQFFTRF-FTW 777
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 65.7 bits (153), Expect = 4e-11
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Frame = -2
Query: 805 YFQTPLTYLEGGNPSGFNHVVTNAGAQ-KRMXQVKGKRDVRVRQVDPQIASMNKGDCFVL 629
YF+ + GG SGFNHV N R+ +GK V V++V +S+N D F+L
Sbjct: 131 YFRPCIMPQPGGVASGFNHVEVNQQDHVTRLYVCQGKHVVHVKEVPFVRSSLNHEDIFIL 190
Query: 628 DLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVD--KYSSDVDVQKFFTA 455
D N I+ F G + E+ KA+ ++D H G+ +V V+ K +D + +F+
Sbjct: 191 DTANKIFQFNGSNSCIQERAKALEVVQYIKDTFHEGKCEVAAVEDGKLMADTEAGEFWGL 250
Query: 454 LGSGVKDLVPDEST--GGDDQE 395
G G L S+ GDD+E
Sbjct: 251 FG-GFAPLPKKTSSEDNGDDKE 271
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = -2
Query: 307 FKQENLSPQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELL----NAKNYPSWVQV 140
F Q++L ++ ++LD + +++VW+G++ A +SQAM ++ L +N +
Sbjct: 622 FTQDDLMAEDIFVLDCRT-DLFVWVGQEVDAKLRSQAMDIGEKFLLHDFLMENLSQDTPI 680
Query: 139 TRVLQNTEPAAFKQYXFTW 83
V + +EP F ++ FTW
Sbjct: 681 FIVTEGSEPQFFTRF-FTW 698
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 712 QVKGKRDVRVRQVDPQIASMNKGDCFVLDLDNDIYVFVGEKAKNVE 575
Q G +++ QVD +S+N C++L N ++ + G +++
Sbjct: 540 QGSGSENMQAIQVDAVSSSLNSSYCYILHNGNTVFTWTGNLTTSLD 585
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 62.5 bits (145), Expect = 4e-10
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 3/196 (1%)
Frame = -2
Query: 661 ASMNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVD--KYS 488
+S+N D F+LD + I+ F G + E+ KA+ ++D H G+ +V V+ +
Sbjct: 170 SSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDTFHEGKCEVAAVEDGRLM 229
Query: 487 SDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPL-AK 311
+D + +F+ G G L P + D++++E + ++ GK++ P+ +
Sbjct: 230 ADAEAGEFWGFFG-GFAPL-PRRAPVEDNEKYEETVFKLLCFNQ-----GKLE--PINYE 280
Query: 310 PFKQENLSPQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRV 131
E L Y+LD ++VW+G+ ++ E+ A A++LL+ N V +V
Sbjct: 281 SLLHELLKTNKCYLLD-CGVELFVWMGRTTSLQERKSASEAAEKLLSDDNRTK-THVIKV 338
Query: 130 LQNTEPAAFKQYXFTW 83
++ E FK W
Sbjct: 339 IEGFETVMFKSKFKEW 354
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = -2
Query: 340 GKIKVTPLAKPFKQENLSPQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLN--- 170
G +K+ + F Q++L ++ +ILD S +I+VW+G+Q + QA+ ++ +
Sbjct: 633 GNLKIKEIYH-FTQDDLMTEDVFILDCHS-DIFVWVGQQVDVKVRLQALDIGEKFVKLDF 690
Query: 169 -AKNYPSWVQVTRVLQNTEPAAFKQYXFTW 83
+N S + +++ +EP F ++ FTW
Sbjct: 691 LMENLSSDTPIFVIMEGSEPTFFTRF-FTW 719
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 643 DCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQ 545
D F+LD +DI+V+VG++ +L+A+ +
Sbjct: 652 DVFILDCHSDIFVWVGQQVDVKVRLQALDIGEK 684
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 544 VRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTG---GDDQEFERNEAS 374
+ Q HG V + Y D D ++F GSG +DL ++ T DQ+FE+ A+
Sbjct: 113 IAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSSDQKFEKLNAA 172
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 544 VRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGD---DQEFERNEAS 374
+ Q HG V + Y D D ++F GSG +DL ++ T + DQ+FE+ A+
Sbjct: 302 IAGQSTHGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGNKRTSKEQSFDQKFEKLNAA 361
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = -2
Query: 541 RDQD----HHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEAS 374
RD+D H R KV+I + +SD D V DES+ DQ FE N+
Sbjct: 75 RDEDEVMGHRKRSKVNISSESNSDNDCSLSSDNHDGDVHLSNHDESSDNHDQHFEENDPL 134
Query: 373 NVILSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTI 257
+ E + K+K+ +PF ++ ++ D+I
Sbjct: 135 LHLTKE--EHMKKLKIKLGKRPFTDDHKKKRHKVESDSI 171
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 350 RRHGKDQSDATSEAFQARELESTKRVYFGHHIWQHLRLDREAVYR 216
R H D + E+ + R LE+ +R Y W+ L+ D + R
Sbjct: 22 RNHEDDDDEEEEESGEGRVLEAWERAYADDRSWEALQEDESGLLR 66
>09_01_0039 -
687711-688607,692336-693113,693414-693501,693761-694148,
694176-694401,694527-694680,695073-695145
Length = 867
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 724 KRMXQVKGKRDVRVRQVDPQIASMNKGDCFVLDLDNDIYVFVGEK-AKNVEKLKAISFAN 548
K ++ G+ RVR+VD + N+ DCF + +D + + K + V K+KA N
Sbjct: 29 KARGELYGRSFGRVREVDVEADGCNRHDCFRILVDLPVAKPLKSKIGQKVNKVKATYQPN 88
Query: 547 QVR 539
R
Sbjct: 89 ASR 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,128
Number of Sequences: 37544
Number of extensions: 384478
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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