Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N01
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 158 4e-39
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 60 2e-09
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 60 2e-09
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 42 7e-04
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 31 1.3
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 31 1.3
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 30 1.7
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 30 1.7
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 3.9
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.9
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 28 6.8
DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 prote... 28 6.8
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 28 6.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 9.0
AF043700-8|AAB97574.2| 374|Caenorhabditis elegans Hypothetical ... 28 9.0
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 9.0
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 9.0
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 9.0
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 9.0
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 9.0
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 158 bits (384), Expect = 4e-39
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 3/246 (1%)
Frame = -2
Query: 805 YFQTPLTYLEGGNPSGFNHVVTNAGAQK-RMXQVKGKRDVRVRQVDPQIASMNKGDCFVL 629
YF + Y+ GG SG+ HV K + KGKR+VR +V+ ++ S+N GD F+L
Sbjct: 107 YFPDGIRYVSGGYESGYRHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFIL 166
Query: 628 DLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALG 449
DL D+YV++ ++ +E++K ++ A + D + G KV I+D D D F++ G
Sbjct: 167 DLGKDLYVWMPPESGRLERIKGMARAKNIADHERMGIPKVHILDDVEWDND-STFWSYFG 225
Query: 448 SGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKP--FKQENLSPQNA 275
GV + DD + + + L +VSDA+G KV+ +++ ++E L P++A
Sbjct: 226 -GVSSVRKVSKGKDDDDNYWKRLTEQITLWKVSDASGAAKVSMVSQGENIRKEQLDPKDA 284
Query: 274 YILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQY 95
+ILD I+G I+VWIG + T E+S+A+ Q L + P W QVTRVL++ E F Q+
Sbjct: 285 FILDAINGGIFVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTRVLESAESTQFTQW 344
Query: 94 XFTWRD 77
W D
Sbjct: 345 FRDWVD 350
Score = 71.7 bits (168), Expect = 6e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 4/227 (1%)
Frame = -2
Query: 745 VTNAGAQKRMXQVKGKRDVRVRQVDPQIASMNKGDCFVLD-LDNDIYVFVGEKAKNVEKL 569
V++A ++ V ++R Q+DP+ D F+LD ++ I+V++G + E+
Sbjct: 256 VSDASGAAKVSMVSQGENIRKEQLDPK-------DAFILDAINGGIFVWIGHECTLEERS 308
Query: 568 KAISFANQVRDQDHHGRG-KVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEF 392
KA+ + Q H R +V V + + ++F +D V DE
Sbjct: 309 KALIWGQNYLKQHHLPRWTQVTRVLESAESTQFTQWF-------RDWV-DE--------- 351
Query: 391 ERNEASNVILSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYVWIGKQSTAN 212
++ +L +VSD +G + V +A F QE+L + ILD ++ +IYVW+G + AN
Sbjct: 352 KKKNTFTPLLFQVSDESGLLHVEEIAN-FTQEDLDGDDVMILDALN-SIYVWVGANANAN 409
Query: 211 EKSQAMTKAQELLNAKNYP--SWVQVTRVLQNTEPAAFKQYXFTWRD 77
EK +A+ A+ L P + + Q EP FK++ +W D
Sbjct: 410 EKKEALNTAKLYLEKDKLPRHKKTAIDTIFQGKEPPTFKKFFPSWDD 456
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
protein.
Length = 1257
Score = 59.7 bits (138), Expect = 2e-09
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 5/245 (2%)
Frame = -2
Query: 802 FQTPLTYLEGGNP-SGFNHVVTNAGAQKRMXQVKGKRDVRVRQVDPQIASMNKGDCFVLD 626
F + Y+EGG SGF A + V + V + S++ CF+LD
Sbjct: 603 FGEEIVYIEGGRTISGFYTTEKPAHLTRLYRAGVNGTAVEMEPVPLSVESLDPRFCFLLD 662
Query: 625 LDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGS 446
I+++ G K++ KA FA ++ +D G+ +++ + + F+ AL
Sbjct: 663 AGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARCPPE---FWQALTG 719
Query: 445 GVKDLVPDESTGGDDQEF-ERNEASNVILSEVSDATGKIKVTPLAKP---FKQENLSPQN 278
PD+ G + E A L +V+ G +++ + P KQ+ L +
Sbjct: 720 N-----PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELPKGIAKQDMLGSKG 774
Query: 277 AYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQ 98
++LD+ S +I++WIGK++ K EL + P + QV R + E F+
Sbjct: 775 VFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEESMMFRS 833
Query: 97 YXFTW 83
W
Sbjct: 834 KFAGW 838
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 59.7 bits (138), Expect = 2e-09
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 5/245 (2%)
Frame = -2
Query: 802 FQTPLTYLEGGNP-SGFNHVVTNAGAQKRMXQVKGKRDVRVRQVDPQIASMNKGDCFVLD 626
F + Y+EGG SGF A + V + V + S++ CF+LD
Sbjct: 603 FGEEIVYIEGGRTISGFYTTEKPAHLTRLYRAGVNGTAVEMEPVPLSVESLDPRFCFLLD 662
Query: 625 LDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGS 446
I+++ G K++ KA FA ++ +D G+ +++ + + F+ AL
Sbjct: 663 AGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARCPPE---FWQALTG 719
Query: 445 GVKDLVPDESTGGDDQEF-ERNEASNVILSEVSDATGKIKVTPLAKP---FKQENLSPQN 278
PD+ G + E A L +V+ G +++ + P KQ+ L +
Sbjct: 720 N-----PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELPKGIAKQDMLGSKG 774
Query: 277 AYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQ 98
++LD+ S +I++WIGK++ K EL + P + QV R + E F+
Sbjct: 775 VFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEESMMFRS 833
Query: 97 YXFTW 83
W
Sbjct: 834 KFAGW 838
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 41.5 bits (93), Expect = 7e-04
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Frame = -2
Query: 718 MXQVKGKRDVRVRQVDPQIASMNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQV- 542
+ QV+G ++V VR V P ++S+++ CFV+ + + G + +EK KA ++
Sbjct: 221 LIQVRGSKNVDVRLVAPAMSSVHEVACFVVVHQKHLMKYEGLYSNILEKTKASQLCIEIL 280
Query: 541 --RDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEAS-N 371
D + V + S + + F + S + + FE A N
Sbjct: 281 GKSDLNCTAESIVTVTGASRSTLS-KLLFCSENSESSSENNNYHQASSVEPFETTVAKLN 339
Query: 370 VILSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYVWIGKQSTANEKSQAMT 191
++L D T + + E + P I D IYVW G+ S + A
Sbjct: 340 LVLRIAGDNTA--ETCSRRERLSYEIMKPSEVLIFD-FGSEIYVWTGRYSNKVSSAYAQE 396
Query: 190 KAQELL 173
A++L+
Sbjct: 397 YAKQLM 402
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/110 (26%), Positives = 54/110 (49%)
Frame = -2
Query: 655 MNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVD 476
++K FVLDLD+ + + ++A AI F + + ++ R ++D S +D
Sbjct: 432 VSKWQSFVLDLDHLVSKYSTDQA-------AIYFVSNLNNKGCRKRLVKLMIDPPPSRID 484
Query: 475 VQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 326
V F+ L + +++++PD +T Q E+ + + S AT IKV
Sbjct: 485 VVPFYARLVATLENVMPDLTTEIVTQLLEK--FRGFLQQKPSSATAIIKV 532
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/110 (26%), Positives = 54/110 (49%)
Frame = -2
Query: 655 MNKGDCFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVD 476
++K FVLDLD+ + + ++A AI F + + ++ R ++D S +D
Sbjct: 432 VSKWQSFVLDLDHLVSKYSTDQA-------AIYFVSNLNNKGCRKRLVKLMIDPPPSRID 484
Query: 475 VQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 326
V F+ L + +++++PD +T Q E+ + + S AT IKV
Sbjct: 485 VVPFYARLVATLENVMPDLTTEIVTQLLEK--FRGFLQQKPSSATAIIKV 532
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 487 SDVDVQKFFTALGSGVKDLVPDESTGGDDQEFER 386
S+ DV+ FF+ +G + DL+ +E D Q ER
Sbjct: 328 SEEDVKSFFSKIGHQIDDLIGEEIQATDGQGIER 361
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 526 HGRGKVDIVDKYSSDVDVQ-KFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 350
HG G D ++ D ++ + + G+G +D V +E G ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEELDDEEYEESGNGNEDEV-EEEVGVEEQEIENNFAYKKVKSEIS 143
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 244 YVWIGKQSTANEKSQA-MTKAQELLNAKNYPSWVQVTRVLQNT 119
Y + GK T E M K ++ K+YP WV T V+Q++
Sbjct: 643 YHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS 685
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 526 HGRG-KVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 350
HG G + DI D+ + + + G+G +D V +E ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEESDDEEYEESGNGSEDEV-EEEVRVEEQEIENNFAYKKVKSEIS 143
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = -2
Query: 502 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 323
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 322 PLAKPFKQENLSPQNAYIL 266
+ F+++ L PQNA +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = -2
Query: 502 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 323
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 322 PLAKPFKQENLSPQNAYIL 266
+ F+++ L PQNA +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = -2
Query: 322 PLAKPFKQENLSPQNAYILDTISGN 248
PLA PF + +L+P++A +++++SG+
Sbjct: 278 PLACPFARMSLTPKDARVIESLSGS 302
>Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical
protein F46F6.4b protein.
Length = 158
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 634 VLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGK 512
V+D+ NDI + GE N+E+ +++ F+ + D++ GR K
Sbjct: 94 VIDV-NDIELPAGEAQPNMERRRSVRFSGR-HDEEEDGRNK 132
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 634 VLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGK 512
V+D+ NDI + GE N+E+ +++ F+ + D++ GR K
Sbjct: 94 VIDV-NDIELPAGEAQPNMERRRSVRFSGR-HDEEEDGRNK 132
>DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 protein
protein.
Length = 161
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 634 VLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGK 512
V+D+ NDI + GE N+E+ +++ F+ + D++ GR K
Sbjct: 97 VIDV-NDIELPAGEAQPNMERRRSVRFSGR-HDEEEDGRNK 135
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 634 VLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGK 512
V+D+ NDI + GE N+E+ +++ F+ + D++ GR K
Sbjct: 97 VIDV-NDIELPAGEAQPNMERRRSVRFSGR-HDEEEDGRNK 135
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF043700-8|AAB97574.2| 374|Caenorhabditis elegans Hypothetical
protein K09H9.1 protein.
Length = 374
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 400 QEFERNEASNVILSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNI 245
++ +N SN+ L D G ++P+A+ + PQ+ YIL+ + N+
Sbjct: 138 EKTSKNSISNLDLRVQLDCLGFGAISPIARFDVLPSTQPQSMYILEEVQINV 189
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 1905 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 1946
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 1905 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 1946
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 364 LSEVSDATGKIKVTPLAKPFKQENLSPQNAYILDTISGNIYV 239
++E S + G +K P+AKP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,836
Number of Sequences: 27780
Number of extensions: 310507
Number of successful extensions: 955
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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