Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M23
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    29   0.38 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.2  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 137 LTLLYIFFAFVSFADLSRQICYIEGQNSTETPLR 238
           LTL +  F     ADL+R I Y+ G N++  PLR
Sbjct: 566 LTLNFKRFGHAVAADLNRNIIYLMGGNASTHPLR 599


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 257 YIFTFSFISSCLLVSNHICTKLQIFSVIIFQDLI 358
           + F   F S+ L+   HIC K  I  +  +Q LI
Sbjct: 276 HFFALQFFSTSLIQYTHICRKCVITILQSYQQLI 309


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 438 YLDLFISVLSNPNVSFNI 491
           Y+DLFIS++S  N++F +
Sbjct: 544 YIDLFISLMSFKNLNFKL 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,726
Number of Sequences: 5004
Number of extensions: 40163
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)