Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M23
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   9.9  
U41104-2|AAK18974.3|  304|Caenorhabditis elegans Nuclear hormone...    27   9.9  
U41104-1|AAR30202.1|  318|Caenorhabditis elegans Nuclear hormone...    27   9.9  
AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear recep...    27   9.9  

>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453  ISVLSNPNVSFNISRNNYHCTIFE 524
            IS +S  N  F  +RN YH ++ E
Sbjct: 1886 ISTISTENSKFKFTRNEYHTSLIE 1909


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453  ISVLSNPNVSFNISRNNYHCTIFE 524
            IS +S  N  F  +RN YH ++ E
Sbjct: 1886 ISTISTENSKFKFTRNEYHTSLIE 1909


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453  ISVLSNPNVSFNISRNNYHCTIFE 524
            IS +S  N  F  +RN YH ++ E
Sbjct: 1886 ISTISTENSKFKFTRNEYHTSLIE 1909


>U41104-2|AAK18974.3|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 109, isoform a protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 17  ENIDILYNMTADNTK*IS*ILLXL*NLQXTIHQLINLFTVL 139
           E+I+ L+    DN K    +LL + NLQ  I++ + LFT+L
Sbjct: 177 EDIENLFKPFYDNYK--RSLLLPMMNLQVDIYEFLTLFTLL 215


>U41104-1|AAR30202.1|  318|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 109, isoform b protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 17  ENIDILYNMTADNTK*IS*ILLXL*NLQXTIHQLINLFTVL 139
           E+I+ L+    DN K    +LL + NLQ  I++ + LFT+L
Sbjct: 191 EDIENLFKPFYDNYK--RSLLLPMMNLQVDIYEFLTLFTLL 229


>AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear receptor
            NHR-109 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 17  ENIDILYNMTADNTK*IS*ILLXL*NLQXTIHQLINLFTVL 139
           E+I+ L+    DN K    +LL + NLQ  I++ + LFT+L
Sbjct: 237 EDIENLFKPFYDNYK--RSLLLPMMNLQVDIYEFLTLFTLL 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,548
Number of Sequences: 27780
Number of extensions: 213134
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)