Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M20
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   3.4  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    26   4.5  
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 538 ISQL*MFRKINKKGLYTDLKKHSYIYXXYSL 630
           + +L  + ++N  G +  +KKH  +Y  YSL
Sbjct: 109 VKKLEKYTRLNLTGFFKIVKKHDKLYPGYSL 139


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 446 IFEILFF-IPAFLIINMRLIVKVLFFIYGDRREYLLPNSVFIL 321
           +FE+ +  +P FL ++    +K + F+ G+ +E+ +PN+ + +
Sbjct: 76  LFELSYAALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNGYFV 118


>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 537 YRLLNSNQELNKISGKSDVLTSD 469
           + LLNSN++  K SGKS + + D
Sbjct: 106 FLLLNSNRQPGKSSGKSSIPSPD 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,537
Number of Sequences: 5004
Number of extensions: 52194
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)