Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M19
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   3.1  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   5.4  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   5.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   5.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.2  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 26   PLFFLTTFLQASGSSCACFQKHNFLEIHSNFYV 124
            PL F+  FL+ + S  + + K  FLE+ +++++
Sbjct: 1049 PLAFINCFLEFTSSKTSFYAKKLFLEVLNSYFM 1081


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 200 NALKHAHMQLYFYTLLDWYNF 262
           N L+H H   +FY +LD  +F
Sbjct: 347 NLLEHLHQSFFFYFILDHLHF 367


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -3

Query: 513 CRDNSTCNLQ-TLVSTTVSYC-YFLACSC*G-KLNYVYNAISETSYILFDIAKY 361
           C     CNL   L    +  C YFL   C      YV+   SE + I F+ AKY
Sbjct: 244 CNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKY 297


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 393 FRKSHCTRNSIFPNNYMRGSNS 458
           F +  C  NS+  + YM GSNS
Sbjct: 293 FARKGCQSNSVVSSVYMNGSNS 314


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +1

Query: 154 NHKIDDKLNYLPK--ITKCT 207
           N K+DDKL Y+ K  I KCT
Sbjct: 260 NAKLDDKLTYVEKQIIEKCT 279


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 244 IGLVQFSININNNNYD 291
           +G  QFS NI+NNNY+
Sbjct: 542 VGNEQFSNNIDNNNYN 557


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  KAQFLRNSFKFLCNPLFYAKSYL-NHKIDDKLNYLPKITKCTKTCTYAIIFLYLIGLV 255
           +A  LR   +           YL +++ID+K  YL +  KC     YA+  +YL+  +
Sbjct: 661 EASKLREGLRLAMEISARGNQYLQDNRIDNKC-YLYERQKCADAIGYALNLIYLLAAI 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,359
Number of Sequences: 5004
Number of extensions: 35016
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)