Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M19
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601...    28   4.1  
10_01_0252 + 2646074-2646430,2646476-2648158                           27   7.2  
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694...    27   9.5  

>01_07_0051 -
           40759529-40759624,40759728-40759835,40759972-40760138,
           40760670-40760796,40760885-40761046,40761235-40761398,
           40761561-40761654,40761736-40761860,40762304-40762449,
           40762796-40762884,40763453-40763518,40763824-40763973
          Length = 497

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 90  CFWKXAHDEPEAWRNVVKKKS 28
           CFW+    +P+AW +VV++ S
Sbjct: 74  CFWRPIASKPDAWFDVVERYS 94


>10_01_0252 + 2646074-2646430,2646476-2648158
          Length = 679

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 151 LNHKIDDKLNYLPKITKCTKTCTYAIIFLYLIGLVQFSININNN--NYDVKSIRNVG 315
           L+HK   K N + K+T     CT  I FL L G V  +I  NN   +Y V   R +G
Sbjct: 328 LSHKEVYKSNDI-KVTYVLLCCTTMIEFLSLFGWVYTNIFRNNPPWSYKVSQCRLIG 383


>04_04_0711 -
           27468045-27468264,27468831-27468935,27469431-27469489,
           27469566-27470009,27470123-27470187,27470871-27471066,
           27471429-27471590
          Length = 416

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 96  KLCFWKXAHDEPEAWRNVVKKKSGPGPVRAI 4
           K   W+  H +P  W+NVV   S  GP  AI
Sbjct: 202 KWTIWRQNHCQPNFWKNVVPAGS-CGPYNAI 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,098
Number of Sequences: 37544
Number of extensions: 170193
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)