Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M19
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    28   4.9  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    28   4.9  
AF025463-2|AAB71006.1|  387|Caenorhabditis elegans Serpentine re...    27   6.5  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 97  LRNSFKFLCNPLFYAKSYLNHKIDDKLNYLPKITKCTKTCTYAIIFLYLIGLVQF 261
           L N FK   N L +  SY+ HK      +L +  K  ++C Y II  +  GL +F
Sbjct: 91  LENLFKVSLNTLSFGSSYMAHK------FLEQEEKMPRSCEYLIINEFSTGLDEF 139


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 26  PLFFLTTFLQASGSSCACFQKHNFLEIHSNFYVILYFMLN 145
           P+   T FL A    CA      + +I S  YV+ Y ++N
Sbjct: 81  PIMLGTHFLMAFNRFCASSMPFGYRKIFSKNYVLTYIIIN 120


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 226 IIFLYLIGLVQFSININNNNYDVKSIRN 309
           + F+  + LVQFSI + N + D++SI +
Sbjct: 10  LTFILFVVLVQFSIGLGNFSRDIRSIND 37


>AF025463-2|AAB71006.1|  387|Caenorhabditis elegans Serpentine
           receptor, class t protein54 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 196 TKCTKTCTYAIIFLYLIGLVQFSIN 270
           TKCT   T  ++FL ++ ++Q ++N
Sbjct: 67  TKCTHPSTQLMLFLSILDIIQLAVN 91


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = +2

Query: 89  HNFLEIHSNFYVILYFMLNLXXXXXXXXXXXXYLKSQNALKHAHMQLYFY 238
           +  + I S FY++LY  +N+             +      +H H Q + Y
Sbjct: 179 NELMNITSGFYLVLYIAVNMFICLLTPFINISIITGMKKNRHLHSQQHIY 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,602,150
Number of Sequences: 27780
Number of extensions: 191429
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)