Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M19
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.0  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.0  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 259 FSININNNNYDVKSIRNVGIL 321
           +  N NNNNY+ K   N+  +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 259 FSININNNNYDVKSIRNVGIL 321
           +  N NNNNY+ K   N+  +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 259 FSININNNNYDVKSIRNVGIL 321
           +  N NNNNY+ K   N+  +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 259 FSININNNNYDVKSIRNVGIL 321
           +  N NNNNY+ K   N+  +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYI 115


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 263 ENCTNPIRYKNIIAYVHVLVHFVILGR*FNLSSIL 159
           + C  P  YKNI+       HF  L R  ++S  L
Sbjct: 21  DGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNL 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 361 IFCNIKKYVTSFGNRIVH 414
           +FC ++KY  SF ++ ++
Sbjct: 236 LFCGLQKYTRSFAHQSIN 253


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 361 IFCNIKKYVTSFGNRIVH 414
           +FC ++KY  SF ++ ++
Sbjct: 231 LFCGLQKYTRSFAHQSIN 248


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 268 NINNNNYDVKSIRNV 312
           N NNNNY+ K   N+
Sbjct: 102 NYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 268 NINNNNYDVKSIRNV 312
           N NNNNY+ K   N+
Sbjct: 102 NYNNNNYNKKLYYNI 116


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 259 FSININNNNYDVKSIRN 309
           +  N NNNNY+  +  N
Sbjct: 329 YKYNYNNNNYNNNNYNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,282
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)