Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M18
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   0.13 
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    26   4.0  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   5.2  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect(2) = 0.13
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 6   SVPLARKYNKHINIIWHEEFTFAYNFKLYILEENTFLQHYYCTIKISYST 155
           +VP A  YN    I  H ++ + +N + Y + +   + + Y T     +T
Sbjct: 244 TVPQAVIYNSPYIITLHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNT 293



 Score = 23.8 bits (49), Expect(2) = 0.13
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 NEAYLFLARRLNIYLFPRRGYYLQI 248
           NEA   L++ + +  FP+R YYL+I
Sbjct: 323 NEAISVLSQ-ITVSQFPKRDYYLRI 346


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 173 SFLKALSTVAYFYCAIIMLQ 114
           +F   LSTV +F CA+I  Q
Sbjct: 12  TFFSKLSTVLFFLCAVITFQ 31


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 381 ILPRTTVLPFLLNQCIIKAMGFFFYMVINL 470
           + P  T     LN  ++    FFF+MV++L
Sbjct: 618 LFPSKTTWVLFLNLTLLNFASFFFFMVLDL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,225
Number of Sequences: 5004
Number of extensions: 40095
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)