Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M18
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 478 QHIKLITM*KKNPIALIIH*FNKKGKTVVLGKMCTLSYLSIQIFYIIFNKFLIN 317
           Q++ +I +     +A+I+H F +K       K+C+ S   + +  I+ N FLIN
Sbjct: 327 QNLLIIALLSSIVLAVIVHEFFEKWYL----KLCSTSIGLVTVLLILLNVFLIN 376


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 478 QHIKLITM*KKNPIALIIH*FNKKGKTVVLGKMCTLSYLSIQIFYIIFNKFLIN 317
           Q++ +I +     +A+I+H F +K       K+C+ S   + +  I+ N FLIN
Sbjct: 327 QNLLIIALLSSIVLAVIVHEFFEKWYL----KLCSTSIGLVTVLLILLNVFLIN 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,301,461
Number of Sequences: 27780
Number of extensions: 218431
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)