Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M17
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...   103   2e-23
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   3.0  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    26   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.2  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score =  103 bits (248), Expect = 2e-23
 Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
 Frame = -2

Query: 780 GETGLTEACLXSDTSLAEAERIILKFVSNHVPEXICPL-AGNSIYMDRMFLIKYMPKLND 604
           G++GLTE C  S+ ++ + E  +L ++  ++P+    L AGNS++ D  FL   MPK+ +
Sbjct: 67  GKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMPKIIE 126

Query: 603 YLHYRCIDVSTVKELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYK 451
           +LHYR IDVST+KELAKRW P   +    KK +HRAL+DILES+ EL++Y+
Sbjct: 127 HLHYRIIDVSTIKELAKRWCPDIPAY--DKKGDHRALSDILESIGELQHYR 175


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 407 KNTNFNYNTVLNIFSL*YFSSW-TLSRISF 493
           KNT+ +++T+++I +L Y  SW  L R+ F
Sbjct: 134 KNTSCSFSTLMSILALVYVPSWINLPRLFF 163


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 705 FVSNHVPEXICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCID 580
           FV N       PL     +  R  L   M  L DYLH+R +D
Sbjct: 108 FVFNWPKHFDIPLLSLPSFDGRAVLYPNMKVLRDYLHWRQVD 149


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 398 LQKKNTNFNYNTVLN--IFSL*YFSSWTLSRISFNARCSNFFWGIKEYSRGYHRFANSLT 571
           L   N +F++ T ++  I SL Y       RIS + +    ++G+K   +    F N L 
Sbjct: 411 LSLSNVDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLK 470

Query: 572 VLTS 583
            + S
Sbjct: 471 YIQS 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,623
Number of Sequences: 5004
Number of extensions: 52085
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)