Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M16
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 356 2e-99
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 73 3e-14
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 70 3e-13
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 42 1e-04
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.24
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.73
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 28 0.97
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.0
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 3.9
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 6.8
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 6.8
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 9.0
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 25 9.0
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 356 bits (875), Expect = 2e-99
Identities = 173/207 (83%), Positives = 189/207 (91%)
Frame = -3
Query: 624 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 445
EYFRD EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTK
Sbjct: 287 EYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTK 346
Query: 444 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP 265
KGSITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP
Sbjct: 347 KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDP 406
Query: 264 NIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQV 85
I+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF V
Sbjct: 407 RILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAV 466
Query: 84 AEVFTGHAGKLVPLEETIKGCSKMXAG 4
AEVFTG G+LV L++TI+ ++ G
Sbjct: 467 AEVFTGIEGRLVSLKDTIRSFKEILEG 493
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 72.9 bits (171), Expect = 3e-14
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 7/183 (3%)
Frame = -3
Query: 624 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT- 448
E+ Q + VL + ++ + A EVSA +P GY + TD+ T+ ER
Sbjct: 261 EFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVE 320
Query: 447 -KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 271
+ GSIT + + +P DD+T P P T + + R + IYP ++ L S SR+M
Sbjct: 321 GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLM 380
Query: 270 DPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-F 106
I +H +V+ + + + + +++G + LS+ED+L + K ++ F
Sbjct: 381 KSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTF 440
Query: 105 LSQ 97
+SQ
Sbjct: 441 ISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 69.7 bits (163), Expect = 3e-13
Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Frame = -3
Query: 624 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI---- 457
EY+RDQ G++V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 343 EYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRAR 401
Query: 456 ---TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 286
+ ++G+++ V A+ P D +DP + T + L + +A+ +P+++ S
Sbjct: 402 CLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLS 461
Query: 285 TSRIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARAR 121
S+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T+ A
Sbjct: 462 YSKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAG 521
Query: 120 KIQR-FLSQ 97
I+ FL Q
Sbjct: 522 IIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 41.5 bits (93), Expect = 1e-04
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 4/181 (2%)
Frame = -3
Query: 624 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 445
E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 283 EWFRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS 341
Query: 444 K----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 277
GS+T++ I D++ P + D L + GI PA++ S SR
Sbjct: 342 PKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSR 401
Query: 276 IMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ 97
+ + A VA ++ L Y+ + A G D L + T+ R ++ L Q
Sbjct: 402 VGSAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQ 458
Query: 96 P 94
P
Sbjct: 459 P 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 426 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 253
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 252 AEHYNVARGVQKILQDYKSL 193
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.73
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -3
Query: 468 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 346
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 0.97
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 466 LHSTHVSSQSRLISYSRWDTTKQSRHF*SSLSETENV-VNEEQYILSFLITEI 621
LH + SS + Y W + + HF +++E N + ++Q+ SF++ +
Sbjct: 198 LHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIINTKIQKDQFSESFIVDSL 250
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 550 SSLSETENVVNEEQYILSFLITEIF 624
+ L N +NEE Y+++ L TEIF
Sbjct: 705 NELKNESNKINEEYYLMNELNTEIF 729
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 450 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 313
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +1
Query: 358 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 519
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 41 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 166
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 300 DPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 169
+ +D+T + +P I E V + Q ++ + + ++DI++ LG
Sbjct: 371 EEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLG 414
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +3
Query: 315 YP-IQQWLWRVQW*HPS 362
YP I QWL R+ W HP+
Sbjct: 259 YPHINQWLKRLYWKHPA 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,836
Number of Sequences: 5004
Number of extensions: 58276
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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