Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M14
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 160 FSGTKESAHXIEKKWLND 107
           FSG +ES+  +E  W ND
Sbjct: 54  FSGPEESSGGVELGWFND 71


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 688 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENF 563
           E+P   K   +   ++ I  D    I + + G  VP+  E+F
Sbjct: 157 ELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 253 QKIEMT-VTGANDRPVKDVV-ISDTKTEVVAEPFSGTKESAHXIEKKWLND 107
           Q + +T VT   + P   V+ +S T   + + P S T  ++  +EK  +ND
Sbjct: 828 QSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVIND 878


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 372 IDNQPAP*CFSLKFSSSK 425
           + NQ +  CFSLKF + K
Sbjct: 537 LGNQNSEMCFSLKFKNKK 554


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 389 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 541
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 73  SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 389 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 541
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 111 SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 VPLKGSATTSVFVSDITTSLTGRSFAPVTVI 242
           VP   +A ++ FVSD+ T L    F P  +I
Sbjct: 454 VPFFANADSN-FVSDVVTKLRYEVFQPGDII 483


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 VPLKGSATTSVFVSDITTSLTGRSFAPVTVI 242
           VP   +A ++ FVSD+ T L    F P  +I
Sbjct: 422 VPFFANADSN-FVSDVVTKLRYEVFQPGDII 451


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 520 SLCTPPPQVSELVER 564
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,548
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)