Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M13
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 226 9e-60
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 223 5e-59
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 223 8e-59
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 221 2e-58
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 216 1e-56
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 129 1e-30
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 128 3e-30
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 3.7
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 3.7
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 27 8.6
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 27 8.6
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 27 8.6
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 27 8.6
01_06_1600 + 38552396-38552600,38552906-38552928 27 8.6
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 226 bits (552), Expect = 9e-60
Identities = 106/143 (74%), Positives = 123/143 (86%)
Frame = -3
Query: 502 DGPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 323
DGPS K WR R A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVR
Sbjct: 239 DGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVR 298
Query: 322 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 143
L KPASY+ IK +KE +EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNFV
Sbjct: 299 LEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFV 358
Query: 142 KLISWYDNEYGYSSRVIDLIKYI 74
KL+SWYDNE+GYSSRV+DLI+++
Sbjct: 359 KLVSWYDNEWGYSSRVVDLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 223 bits (546), Expect = 5e-59
Identities = 107/145 (73%), Positives = 123/145 (84%)
Frame = -3
Query: 502 DGPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 323
DGPS K WR R A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVR
Sbjct: 210 DGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVR 269
Query: 322 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 143
L KPASY+ IK +KE AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+D FV
Sbjct: 270 LEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTFV 329
Query: 142 KLISWYDNEYGYSSRVIDLIKYIQS 68
KL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 330 KLVSWYDNEWGYSTRVIDLIRHMHS 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 223 bits (544), Expect = 8e-59
Identities = 105/143 (73%), Positives = 123/143 (86%)
Frame = -3
Query: 502 DGPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 323
DGPS K WR RGA QNIIP+STGAAKAVGKV+PALNGKLTGMAFRVP NVSVVDLT R
Sbjct: 266 DGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTCR 325
Query: 322 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 143
L K ASYE +K +KEA+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F+
Sbjct: 326 LEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFM 385
Query: 142 KLISWYDNEYGYSSRVIDLIKYI 74
KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 386 KLVSWYDNEWGYSNRVLDLIGHM 408
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 221 bits (541), Expect = 2e-58
Identities = 102/143 (71%), Positives = 123/143 (86%)
Frame = -3
Query: 502 DGPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 323
DGPS K WR R A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP +VSVVDLTVR
Sbjct: 214 DGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVR 273
Query: 322 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 143
+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNFV
Sbjct: 274 IEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFV 333
Query: 142 KLISWYDNEYGYSSRVIDLIKYI 74
KL++WYDNE+GYS+RVIDLI+++
Sbjct: 334 KLVAWYDNEWGYSNRVIDLIRHM 356
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 216 bits (527), Expect = 1e-56
Identities = 100/143 (69%), Positives = 121/143 (84%)
Frame = -3
Query: 502 DGPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 323
DGPS K WR RGA QNIIP+STGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT R
Sbjct: 325 DGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCR 384
Query: 322 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 143
+ K ASY+ +K +K A+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F+
Sbjct: 385 IEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFM 444
Query: 142 KLISWYDNEYGYSSRVIDLIKYI 74
KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 445 KLVSWYDNEWGYSNRVLDLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 129 bits (312), Expect = 1e-30
Identities = 65/138 (47%), Positives = 87/138 (63%)
Frame = -3
Query: 478 RDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYE 299
R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL V++ K E
Sbjct: 263 RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAE 322
Query: 298 AIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDN 119
+ Q +++A LKGIL + +VS DF S DA+ + + D+ VK+I+WYDN
Sbjct: 323 EVNQAFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDN 382
Query: 118 EYGYSSRVIDLIKYIQSK 65
E+GYS RV+DL + ++
Sbjct: 383 EWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 128 bits (309), Expect = 3e-30
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = -3
Query: 478 RDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPA-SY 302
R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL + K +
Sbjct: 275 RRARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITA 334
Query: 301 EAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYD 122
+ + ++AA GPL GIL + +VS DF SS DA+ + + D+ VK+++WYD
Sbjct: 335 DDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYD 394
Query: 121 NEYGYSSRVIDLIKYIQSK 65
NE+GYS RV+DL + SK
Sbjct: 395 NEWGYSQRVVDLAHLVASK 413
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 114 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 212
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 460 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 281
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 280 KEAAEGPL-KGI 248
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -3
Query: 196 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKY 77
H IFD S +NF+ + + ++ +G ++ L+ Y
Sbjct: 491 HDVIFDLIISKSAEENFITVFGYQNHAFGPQDKIRRLVHY 530
>07_03_0749 +
21212463-21212911,21212976-21213305,21213336-21213436,
21213758-21213883,21213962-21214083,21214177-21214450,
21214767-21215004,21215101-21215248,21215400-21215732
Length = 706
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 165 IPAAASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPRRTVRSTT 344
+PA A+ + EC+ + + + T +S + R G AA+L A+ GF RT +
Sbjct: 25 LPATAAPVAECDPGVANTNVTGNSAFDRN--LGLLAAALAANASAAGAPGFAVRTAGAAP 82
Query: 345 D 347
D
Sbjct: 83 D 83
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = -2
Query: 443 CLYWCCQSCG*GYP--CS*WQADWNGIP 366
C WCC + G P C+ W W+ P
Sbjct: 57 CKSWCCAAIAAGVPRSCTPWLMSWSDKP 84
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 196 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 92
H + D +S +NFV +++ D GYS + +
Sbjct: 449 HDMVLDLICSLSSEENFVTILNGCDLSQGYSLKYV 483
>01_06_1600 + 38552396-38552600,38552906-38552928
Length = 75
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 499 GPSGKLWRDXRGAQQNIIPASTGAAKAVGKVIPALNGKLTG 377
G G WR +G ++ A A+AVGK A G+ +G
Sbjct: 29 GRGGGRWRPAKGDAMAMMAAERSCARAVGKERRAGGGQRSG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,075
Number of Sequences: 37544
Number of extensions: 239963
Number of successful extensions: 652
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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