Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M10
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.20
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 1.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 4.4
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 5.8
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 5.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.8
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 677 PPSQXRTPPAPSTRDTP----APLKLSSNITLKPSARPPKPLARFTKPPTGTA 531
PP + PP PS+ P AP+K + PSA PP P + PP A
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP-PKVPPPPLSQA 209
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 677 PPSQXRTPPAPSTRDTPAPLKLSSNITLKPSARPPKPLARFTKP 546
P S PP S +P PL L S +L+ P L+ +KP
Sbjct: 127 PSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKP 170
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 671 SQXRTPPAPSTRDTPAPLKLSSNITLKPSARPPKPLARFTKPP 543
S+ TPP P TP L S+ +L PSA P P+ PP
Sbjct: 410 SRTSTPPVP----TPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 677 PPSQXRTPPAPSTRDTPAPLKLSSNITLKPSARPPKPLARFTK--PPTGTA 531
PP R+ APST P PL SS P A PP R PP G A
Sbjct: 362 PPPPPRS--APSTGRQPPPLS-SSRAVSNPPAPPPAIPGRSAPALPPLGNA 409
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 653 PAPSTRDTPAPLKLSSNITLKPSARPPKPLARFTKPP 543
P S TP+P++L S+ L+P + P P + PP
Sbjct: 216 PTRSPARTPSPIRLYSSDALRPQS-PLSPSVEYLTPP 251
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 656 PPAPSTRDTPAPLKLSSNITLKPSARPP 573
P A S +TPAP K++S T K +A PP
Sbjct: 152 PAAQSKTETPAP-KVTSESTKKETAAPP 178
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 674 PSQXRTPPAPS--TRDTPAPLKLSSNITLKPSARPPKPLAR 558
P + R PP PS + +P S N++ KPS P P R
Sbjct: 356 PEKPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPPR 396
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 677 PPSQXRTPPAPSTRDTPAPLKLSSNITLKPSA-RPPKPLARFTKPP 543
PPS+ P PS P P ++ PSA PP P+ PP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 656 PPAPSTRDTPAPLKLSSNITLKPSARPPK---PLARFTKP 546
P AP + P P+ SNI P++ PPK P A +KP
Sbjct: 963 PAAPPSIPPPLPV---SNILSSPTSEPPKDHPPSAPLSKP 999
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 674 PSQXRTPPAPSTRDTPAPLKLSSNITLKPSARPPKPLARFTKPPTGT 534
P+Q P PS P + S+ + KP+A P P A + P+G+
Sbjct: 101 PNQTTAMPPPSNN----PSRHVSSTSNKPAAVSPNPAAHHAELPSGS 143
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 680 TPPSQXRTPPAPS--TRDTPAPLKLSSNITLKPSARP 576
T S+ PP PS TR TP ++ SS+ SA P
Sbjct: 348 TVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEP 384
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.8
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Frame = -1
Query: 417 YGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREPLFSNISYAKIACFFFNSRYY* 238
YG+ YG+ + ++ + + + + AW + R FS +S+AK A + S +
Sbjct: 468 YGVG--YGMPSSHSQFMGF----FSAYMIAWDYKYRRSQCFSMLSFAKYAIYLTLSTFVC 521
Query: 237 ITLHDRPCQLLNALVIDNVVP-GVGRVW*HRSTVGISRIPG---WRLVLPFLQ 91
+ + L +V ++ GVG W + VG R G W L LP LQ
Sbjct: 522 SSRYLLDFHYLTQVVYGYMIGFGVGLFWVY--LVGKLRSLGVTKWLLSLPPLQ 572
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 677 PPSQXRTPPAPSTRDTPA-PLKLSSNITLKPSARPPKP 567
P + P P TR P PL S PS++PP P
Sbjct: 42 PAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAP 79
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -2
Query: 671 SQXRTPPAPSTRDTPAPLKLSSNITLKPSARPPKPL-----ARFTKPPT 540
S+ +P + R +P+P LS TL P+ PKP RF + PT
Sbjct: 347 SRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPT 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,981
Number of Sequences: 5004
Number of extensions: 36010
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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