Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M09
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 276 1e-74
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 274 5e-74
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 274 7e-74
04_04_0018 - 22178972-22179179,22179264-22179502 32 0.58
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.1
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 9.4
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.4
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 28 9.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 276 bits (677), Expect = 1e-74
Identities = 129/206 (62%), Positives = 166/206 (80%)
Frame = -3
Query: 684 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 505
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 504 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 325
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 324 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 145
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198
Query: 144 KACHGXYPLRDVCIRKVKVLKRPRFE 67
KA +PL++V +RKVK+LK P+F+
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFD 224
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 274 bits (672), Expect = 5e-74
Identities = 129/206 (62%), Positives = 165/206 (80%)
Frame = -3
Query: 684 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 505
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 504 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 325
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 324 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 145
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198
Query: 144 KACHGXYPLRDVCIRKVKVLKRPRFE 67
KA +PL++V +RKVK+LK P+F+
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFD 224
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 274 bits (671), Expect = 7e-74
Identities = 129/206 (62%), Positives = 165/206 (80%)
Frame = -3
Query: 684 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 505
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 504 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 325
+++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 324 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 145
CIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198
Query: 144 KACHGXYPLRDVCIRKVKVLKRPRFE 67
K+ +PL++V IRKVK+LK P+F+
Sbjct: 199 KSTSSIFPLQNVFIRKVKILKAPKFD 224
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 27 STAFAVKFHQLRVSRNGASSTLSPFGCKHRAEGXCHGRPSRCPWQWSQESTC 182
S A A + +RV RN S LS G + + C S+ PW +S + TC
Sbjct: 49 SEAMATEKLGVRVERNPPESRLSELGVREWPKWGCE--KSKFPWTYSAKETC 98
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 449 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 360
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 407 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 550
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 541 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 633
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 27.9 bits (59), Expect = 9.4
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = -3
Query: 261 QVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGXYPLRDVCIRKVKVLK 82
Q+R+I+KK+ II + VT R + + K+ EKA V +K+LK
Sbjct: 502 QIRSIKKKIGRIINKPVTAMSSRRMARFIDEIDTIKE-EKA--------RVFEEIIKILK 552
Query: 81 RPRFERLEVDGTS 43
PR +R E DG+S
Sbjct: 553 NPRRKR-ENDGSS 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,116,449
Number of Sequences: 37544
Number of extensions: 458514
Number of successful extensions: 1291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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