Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M08
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   101   8e-23
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    32   0.075
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.6  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  101 bits (243), Expect = 8e-23
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
 Frame = -1

Query: 740 TDFXDCLEVFLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKA-KPVVSFIAGLTAP 564
           T+F D L++FL DP T+GIILIGEIGG+AEE A+E++   N  +   KPVVSFIAG TAP
Sbjct: 219 TNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGATAP 278

Query: 563 PGRRMXXXXXXXXXXXXXAMDKIKALEKANVIVTRSPAKMGVELHKEMKRLE 408
            GRRM             A  K +ALE A V ++RSPA +G  + +E+ +L+
Sbjct: 279 KGRRMGHAGAIVAGGKGTAAAKFEALEAAGVRISRSPATLGSLIVEELNKLK 330


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -1

Query: 740 TDFXDCLEVFLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAG 576
           T F D L  F  DP  K ++L+GE+GG  E    E +     G   KP+V++  G
Sbjct: 215 TTFIDHLIRFEADPACKLMVLLGEVGGVEEYRVIEAV---KNGTIKKPIVAWAIG 266


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 637 SDANSSAFPPISPMRMMPLVSGSLRKT 717
           ++ NS   P    ++M+PLV   LRKT
Sbjct: 204 AELNSEQLPATEKLKMLPLVDAVLRKT 230


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 329 YCYYLFSIVVTICLVLLF 276
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 89  LIAFLTNASAYLIRCTIEFVHAIAISTRPIKHCYIKL 199
           LI+ L  A   L    ++F H  A+S+  +  CYI+L
Sbjct: 400 LISRLLPALGALSLSNVDFSHRTAVSSDILSLCYIRL 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,985
Number of Sequences: 5004
Number of extensions: 54516
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)