Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M08
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   108   5e-24
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    33   0.18 
12_01_0272 + 1985348-1986036,1986142-1988020                           32   0.42 
11_01_0271 + 2039100-2041760                                           32   0.42 
02_05_0953 - 33027007-33029079                                         29   2.9  
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834...    28   9.0  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  108 bits (259), Expect = 5e-24
 Identities = 57/109 (52%), Positives = 72/109 (66%)
 Frame = -1

Query: 740 TDFXDCLEVFLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPP 561
           T+F DCLE F+ DP+T+GI+LIGEIGG AEE A+ ++ +  T    KPVV+FIAGLTAPP
Sbjct: 221 TNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKT---QKPVVAFIAGLTAPP 277

Query: 560 GRRMXXXXXXXXXXXXXAMDKIKALEKANVIVTRSPAKMGVELHKEMKR 414
           GRRM             A DKIKAL +A V V  SPAK+G  + +  K+
Sbjct: 278 GRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQ 326


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -1

Query: 701 PETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTA 567
           P+ K ++++GE+GG  E    E L Q   G+  KPVV++++G  A
Sbjct: 238 PQVKMMVVLGELGGKDEYSLVEALKQ---GKVQKPVVAWVSGTCA 279


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 74  YHNNYLIAFLTNASAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLV 208
           YH  Y++ F +NA+A++    I   + +  IST+ IK+C +++ ++
Sbjct: 380 YHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMI 425


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 74  YHNNYLIAFLTNASAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLV 208
           YH  Y++ F +NA+A++    I   + +  IST+ IK+C +++ ++
Sbjct: 415 YHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMI 460


>02_05_0953 - 33027007-33029079
          Length = 690

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 459 TGDDYISFF*SLNFVHGASFAARNDGTGVTHSSARGSRQTGD 584
           T DDYI+F  SL +         NDG+  T  S R  R  GD
Sbjct: 549 TADDYITFLCSLGYNSSQIALFTNDGS-TTDCSTRPRRSVGD 589


>05_04_0098 +
           17982196-17982355,17982761-17982978,17983232-17983418,
           17983957-17984057,17984708-17984885,17984956-17985233
          Length = 373

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 740 TDFXDCLEVF--LKDPETK-GIILIGEIGGNAEELASEYLTQYNTGQK 606
           T+F D  +++  LK P  K G  +I   G +A E+ SEY+    TG+K
Sbjct: 158 TEFLDRYQMYKLLKGPYDKEGACIIVTAGSDAIEIESEYMFGTLTGEK 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,675
Number of Sequences: 37544
Number of extensions: 321091
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)