Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M07
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 82 2e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 80 9e-16
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 79 2e-15
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.2
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.9
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.9
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 29 2.9
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 28 5.1
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 6.8
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 27 6.8
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 8.9
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 82.2 bits (194), Expect = 2e-16
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Frame = -2
Query: 418 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 248
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65
Query: 247 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 74
VV K + KPA + + R+ VK + N+YR DL K L R SA
Sbjct: 66 ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125
Query: 73 ILRS 62
+ RS
Sbjct: 126 VYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 80.2 bits (189), Expect = 9e-16
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 415 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 245
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 244 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 68
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 67 RS 62
RS
Sbjct: 128 RS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 79.4 bits (187), Expect = 2e-15
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 415 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 245
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67
Query: 244 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 68
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 67 RS 62
RS
Sbjct: 128 RS 129
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 436 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 305
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 431 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 330
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 317 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 427
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 102 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 7
A PF + +S+PR P + RQP P R++
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 404 HPVQ*RRHFYGLNLFLHQTQRAHN-VCVDKKDANQNSF 514
HP++ R H L+L Q RA N VC +D N ++F
Sbjct: 323 HPLRRREHAVPLHLLCQQGTRALNMVCCWAEDPNSDAF 360
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 394 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 245
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 428 FYGLNLFLHQTQRAHNVCVDKKDAN 502
F +NLF+H+TQ + V VD KD++
Sbjct: 281 FAEINLFVHRTQFSIKVMVDIKDSD 305
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 55 ASGSGGWLKHDEG*PCIGLCGSG*P 129
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,054
Number of Sequences: 37544
Number of extensions: 300952
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -