Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M05
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 29 0.65
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 28 1.1
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 2.0
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 27 2.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.1
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 25 6.1
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 6.1
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 25 8.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.1
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.65
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = -2
Query: 359 YQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKKFYSSLVDKEA 180
Y+ E + L Y+ +S+Y K YE + ++ + P++ + ++ K V KE
Sbjct: 70 YKDSPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKEG 129
Query: 179 FV 174
++
Sbjct: 130 YI 131
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 497 ENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQCQDILKKF 363
E+ CR E PD++I E+++ +N+AS+ + QDI +F
Sbjct: 52 EDACRRLKEFFPDRKIRLEYVLLDLSNMASV---EAAVQDIATRF 93
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 522 FFKISYCFFPIIF 560
FF I+YC+FPI F
Sbjct: 206 FFDITYCYFPITF 218
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 2.6
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 23/181 (12%)
Frame = -2
Query: 572 DAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQI--SSEFIITIANNVASLLH 399
+ +N E N +AI +S N+ R+ C D + S+ + + A+ + S H
Sbjct: 108 EKFNPTPGELINANIGQAITSLWSA-NSVRS-CTYGNDSVLIDSAPYFFSRADEICSR-H 164
Query: 398 CQQQCQDILKKFSYQSGIEFLTDVLDYLQISYY-----------YTKDYEGAAEAV---- 264
DIL+ + GI ++ LD+LQI + + +E +
Sbjct: 165 YVPTIDDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVS 224
Query: 263 ------STYMVMIPDAEDMIENKKFYSSLVDKEAFVNRSDIVYYFKRDTYEKMILNLXHK 102
Y P+ ++E+ + S+++ + F++ S I++ K D + K + ++ +
Sbjct: 225 LNDYDKKLYERAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKFDLFRKKLEHVPFQ 284
Query: 101 D 99
D
Sbjct: 285 D 285
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +1
Query: 379 SWHCCWQCKRDATLFAIVMINSEDI-CW 459
SW+C W K D+ L A IN CW
Sbjct: 1127 SWNCSWGIKEDSMLLA--GINKHGFGCW 1152
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDY 507
GK +N W + TNF E+ K Y
Sbjct: 244 GKMHMQENQWSEAQTNFFESFKSY 267
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 215 CFLSYLQHQVS*PYKW 262
C+ SY+QH+ S P +W
Sbjct: 281 CYTSYVQHRGSIPLRW 296
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 117 QNHFFISIPFKVVNNIRSVNKSFFIYKRAI 206
++H I+IPF++V + ++K IY+ +I
Sbjct: 291 RSHENINIPFRIVPIVEQLSKQKIIYRISI 320
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +3
Query: 96 TVLVXQIQNHFFISIPFKVVNNIRSVNKSFFIYKRAIEFFVFYHIFSIRYHNHISGDRFS 275
T+L +H F++ +N S + FI +I+ + Y + N+ S + FS
Sbjct: 424 TILTTTYDSHTFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYSVTPTSAENYTSSEAFS 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,352
Number of Sequences: 5004
Number of extensions: 38807
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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