Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M05
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0025 - 7165873-7165907,7166186-7166329,7166779-7166842,716...    33   0.17 
01_06_1574 + 38337669-38338196                                         31   0.89 
09_02_0104 - 4329068-4329926,4330967-4331811                           29   2.0  
02_05_0166 + 26412217-26413403,26413918-26414800                       29   2.7  
09_04_0520 + 18286435-18287279,18287818-18288697                       29   3.6  
08_02_1092 + 24267737-24268641,24269005-24269884                       29   3.6  
04_04_0696 + 27328043-27329259,27329887-27330757                       28   4.7  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    28   6.2  

>10_03_0025 -
           7165873-7165907,7166186-7166329,7166779-7166842,
           7166876-7166887
          Length = 84

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 391 CWQCKRDATLFAIVMINSEDICWSGCNSHSARQL 492
           C  C+ +A L  +V++++ D C+  CN H A ++
Sbjct: 29  CSSCRCEAALPVMVVLSASDFCFKNCNLHKASRV 62


>01_06_1574 + 38337669-38338196
          Length = 175

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 147 KVVNNIRSVNKSFFIYKRAIEFFVFYHIFSIRYHNHISGDR 269
           KV N +   NK F I   ++  + FYHI  +RY    S ++
Sbjct: 21  KVCNEVEKPNKRFLICAHSLCPYKFYHIRCLRYEQIASSEQ 61


>09_02_0104 - 4329068-4329926,4330967-4331811
          Length = 567

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 225 HIFSIRYHNHISGDRFSCTLIIFCXXXXXXXXXXXXSKEFYS*LIAKFFQYILALLLAV 401
           H F    + H   D+FSC ++ FC              +F+    AKF  Y+  +LLA+
Sbjct: 236 HPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQKQPGKFFPEQAAKF--YVAEVLLAL 292


>02_05_0166 + 26412217-26413403,26413918-26414800
          Length = 689

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 225 HIFSIRYHNHISGDRFSCTLIIFCXXXXXXXXXXXXSKEFYS*LIAKFF--QYILAL 389
           H F    + H   DRFSC ++ FC             ++ +S   A+F+  + +LAL
Sbjct: 350 HPFLPTLYTHFETDRFSCLVMEFCPGGDLHTLRQRQPRKHFSEYAARFYAAEVLLAL 406


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 225 HIFSIRYHNHISGDRFSCTLIIFCXXXXXXXXXXXXSKEFYS*LIAKFFQYILALLLAV 401
           H F    + H   D+FSC ++ FC              + +S   AKF  Y+  +LLA+
Sbjct: 236 HPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAAKF--YVAEVLLAL 292


>08_02_1092 + 24267737-24268641,24269005-24269884
          Length = 594

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 225 HIFSIRYHNHISGDRFSCTLIIFCXXXXXXXXXXXXSKEFYS*LIAKFFQYILALLLAV 401
           H F    + H   D+FSC ++ FC              + +S   AKF  Y+  +LLA+
Sbjct: 256 HPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAAKF--YVAEVLLAL 312


>04_04_0696 + 27328043-27329259,27329887-27330757
          Length = 695

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 225 HIFSIRYHNHISGDRFSCTLIIFCXXXXXXXXXXXXSKEFYS*LIAKFF--QYILAL 389
           H F    + H   DRFSC ++ FC            + + +S   A+F+  + +LAL
Sbjct: 360 HPFLPTLYTHFETDRFSCLVMEFCPGGDLHTLRQRQAGKHFSEYAARFYAAEVLLAL 416


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 401 HCQQQCQDILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMI 222
           H Q   Q  +   S ++G+E LT ++     ++     +EGA E +S   V + DA   +
Sbjct: 319 HAQSSRQPAIST-SEKTGLEGLTGLMVPTSRAFTIVDLFEGAVEKISEVWVTVGDARTEL 377

Query: 221 ENK 213
           E +
Sbjct: 378 EQE 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,455
Number of Sequences: 37544
Number of extensions: 196412
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)