Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_M05
(582 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005029-1|AAH05029.1| 527|Homo sapiens LEPREL1 protein protein. 81 4e-15
AK001580-1|BAA91769.1| 527|Homo sapiens protein ( Homo sapiens ... 81 4e-15
AJ430351-1|CAD23039.2| 708|Homo sapiens leprecan-like 1 protein... 81 4e-15
BC008745-1|AAH08745.1| 401|Homo sapiens cartilage associated pr... 76 8e-14
AK091772-1|BAC03743.1| 388|Homo sapiens protein ( Homo sapiens ... 76 8e-14
AJ006470-1|CAA07054.1| 401|Homo sapiens cartilage-associated pr... 76 8e-14
BC108311-1|AAI08312.1| 697|Homo sapiens LEPRE1 protein protein. 67 5e-11
AK075418-1|BAC11608.1| 736|Homo sapiens protein ( Homo sapiens ... 67 5e-11
AK027697-1|BAB55305.1| 736|Homo sapiens protein ( Homo sapiens ... 67 5e-11
AK027680-1|BAB55291.1| 736|Homo sapiens protein ( Homo sapiens ... 67 5e-11
AK027648-1|BAB55264.1| 804|Homo sapiens protein ( Homo sapiens ... 67 5e-11
AF097432-1|AAG31019.1| 736|Homo sapiens GROS1-L protein protein. 67 5e-11
AF097431-1|AAG31018.1| 363|Homo sapiens GROS1-S protein protein. 66 1e-10
U47621-1|AAC51792.1| 437|Homo sapiens nucleolar autoantigen No5... 63 6e-10
BC011701-1|AAH11701.1| 437|Homo sapiens synaptonemal complex pr... 63 6e-10
BC007942-1|AAH07942.1| 437|Homo sapiens synaptonemal complex pr... 63 6e-10
BC001047-1|AAH01047.1| 437|Homo sapiens synaptonemal complex pr... 63 6e-10
AK222945-1|BAD96665.1| 437|Homo sapiens synaptonemal complex pr... 63 6e-10
AJ250583-1|CAC16786.1| 437|Homo sapiens nucleolar protein No55 ... 63 6e-10
U68233-1|AAB08107.1| 472|Homo sapiens farnesol receptor HRR-1 p... 32 1.3
BC130573-1|AAI30574.1| 476|Homo sapiens NR1H4 protein protein. 32 1.3
AF478446-1|AAM53551.1| 486|Homo sapiens farnesoid-X-receptor be... 32 1.3
AF478445-1|AAM53550.1| 482|Homo sapiens farnesoid-X-receptor be... 32 1.3
AF384555-1|AAK60271.1| 476|Homo sapiens farnesol receptor protein. 32 1.3
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 30 6.8
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 30 6.8
BC071778-1|AAH71778.1| 475|Homo sapiens NR1H4 protein protein. 30 6.8
>BC005029-1|AAH05029.1| 527|Homo sapiens LEPREL1 protein protein.
Length = 527
Score = 80.6 bits (190), Expect = 4e-15
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFI-------ITIAN 420
G Y +D+E I +FE+A+++YF + CR CE P + E++ IA+
Sbjct: 36 GVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCE-GPQRFEEYEYLGYKAGLYEAIAD 94
Query: 419 NVASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVM 246
+ +L CQ +C +++ + S IE FL DYLQ +YY +Y A E Y++
Sbjct: 95 HYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLC 154
Query: 245 IPDAEDMIENKKFYSSL----VDKEAFVNRSDIVYYFKRDTYEKMIL 117
PD ED+++N +Y SL +D + R D+ + KR E ++
Sbjct: 155 HPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELI 201
>AK001580-1|BAA91769.1| 527|Homo sapiens protein ( Homo sapiens
cDNA FLJ10718 fis, clone NT2RP3001096, weakly similar to
Rattus norvegicus leprecan mRNA. ).
Length = 527
Score = 80.6 bits (190), Expect = 4e-15
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFI-------ITIAN 420
G Y +D+E I +FE+A+++YF + CR CE P + E++ IA+
Sbjct: 36 GVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCE-GPQRFEEYEYLGYKAGLYEAIAD 94
Query: 419 NVASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVM 246
+ +L CQ +C +++ + S IE FL DYLQ +YY +Y A E Y++
Sbjct: 95 HYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLC 154
Query: 245 IPDAEDMIENKKFYSSL----VDKEAFVNRSDIVYYFKRDTYEKMIL 117
PD ED+++N +Y SL +D + R D+ + KR E ++
Sbjct: 155 HPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELI 201
>AJ430351-1|CAD23039.2| 708|Homo sapiens leprecan-like 1 protein
protein.
Length = 708
Score = 80.6 bits (190), Expect = 4e-15
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFI-------ITIAN 420
G Y +D+E I +FE+A+++YF + CR CE P + E++ IA+
Sbjct: 217 GVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCE-GPQRFEEYEYLGYKAGLYEAIAD 275
Query: 419 NVASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVM 246
+ +L CQ +C +++ + S IE FL DYLQ +YY +Y A E Y++
Sbjct: 276 HYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLC 335
Query: 245 IPDAEDMIENKKFYSSL----VDKEAFVNRSDIVYYFKRDTYEKMIL 117
PD ED+++N +Y SL +D + R D+ + KR E ++
Sbjct: 336 HPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELI 382
>BC008745-1|AAH08745.1| 401|Homo sapiens cartilage associated
protein protein.
Length = 401
Score = 76.2 bits (179), Expect = 8e-14
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Frame = -2
Query: 569 AYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQ 390
AYN +W +IT+ E A+ D+F C A CE + + +F ++IA++ +L C+
Sbjct: 216 AYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVLECKI 275
Query: 389 QCQDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENK 213
QC++ L +E F+ + YLQ +YY D + AA +Y++ + + M +N
Sbjct: 276 QCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNL 335
Query: 212 KFYSSLVD-----KEAFVNRSDIVYYFKRDTYEKMILNLXHK---DSDEG 87
+Y D E F R + V +F T +K + + + D DEG
Sbjct: 336 VYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDFAKENIMDDDEG 385
Score = 41.1 bits (92), Expect = 0.003
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = -2
Query: 491 NCRAECELQPDQQISSEFIITIANNVASLLHCQQQCQDILKKF-SYQSGIEFLTDV---- 327
NC A + +P ++S + + + HC ++C+ L F Q + L D
Sbjct: 87 NCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSRDVLADFQRRE 146
Query: 326 -LDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKKFYSSLVDKEAFV 174
+LQ +Y+ + A A T+++ PD E M N +Y SL E ++
Sbjct: 147 PYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYI 198
>AK091772-1|BAC03743.1| 388|Homo sapiens protein ( Homo sapiens
cDNA FLJ34453 fis, clone HLUNG2002429, highly similar to
Homo sapiens mRNA for cartilage-associated protein. ).
Length = 388
Score = 76.2 bits (179), Expect = 8e-14
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Frame = -2
Query: 569 AYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQ 390
AYN +W +IT+ E A+ D+F C A CE + + +F ++IA++ +L C+
Sbjct: 203 AYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVLECKI 262
Query: 389 QCQDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENK 213
QC++ L +E F+ + YLQ +YY D + AA +Y++ + + M +N
Sbjct: 263 QCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNL 322
Query: 212 KFYSSLVD-----KEAFVNRSDIVYYFKRDTYEKMILNLXHK---DSDEG 87
+Y D E F R + V +F T +K + + + D DEG
Sbjct: 323 VYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDFAKENIMDDDEG 372
Score = 43.6 bits (98), Expect = 5e-04
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Frame = -2
Query: 572 DAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQ 393
D Y+ W +++ + E NC A + +P ++S + + + HC
Sbjct: 53 DKYSGEHWAESVRDSEAFC------HRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCL 106
Query: 392 QQCQDILKKF-SYQSGIEFLTDV-----LDYLQISYYYTKDYEGAAEAVSTYMVMIPDAE 231
++C+ L F Q E L D +LQ +Y+ + A A T+++ PD E
Sbjct: 107 KRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDE 166
Query: 230 DMIENKKFYSSLVDKEAFV 174
M N +Y SL E ++
Sbjct: 167 MMKRNMAYYKSLPGAEDYI 185
>AJ006470-1|CAA07054.1| 401|Homo sapiens cartilage-associated
protein (CASP) protein.
Length = 401
Score = 76.2 bits (179), Expect = 8e-14
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Frame = -2
Query: 569 AYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQ 390
AYN +W +IT+ E A+ D+F C A CE + + +F ++IA++ +L C+
Sbjct: 216 AYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVLECKI 275
Query: 389 QCQDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENK 213
QC++ L +E F+ + YLQ +YY D + AA +Y++ + + M +N
Sbjct: 276 QCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNL 335
Query: 212 KFYSSLVD-----KEAFVNRSDIVYYFKRDTYEKMILNLXHK---DSDEG 87
+Y D E F R + V +F T +K + + + D DEG
Sbjct: 336 VYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDFAKENIMDDDEG 385
Score = 42.3 bits (95), Expect = 0.001
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = -2
Query: 491 NCRAECELQPDQQISSEFIITIANNVASLLHCQQQCQDILKKF-SYQSGIEFLTDV---- 327
NC A + +P ++S + + + HC ++C+ L F Q E L D
Sbjct: 87 NCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRRE 146
Query: 326 -LDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKKFYSSLVDKEAFV 174
+LQ +Y+ + A A T+++ PD E M N +Y SL E ++
Sbjct: 147 PYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYI 198
>BC108311-1|AAI08312.1| 697|Homo sapiens LEPRE1 protein protein.
Length = 697
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AK075418-1|BAC11608.1| 736|Homo sapiens protein ( Homo sapiens
cDNA PSEC0109 fis, clone NT2RP2005671, highly similar to
Leucine proline-enriched proteoglycan (leprecan) 1. ).
Length = 736
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AK027697-1|BAB55305.1| 736|Homo sapiens protein ( Homo sapiens
cDNA FLJ14791 fis, clone NT2RP4001064, weakly similar to
SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
Length = 736
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AK027680-1|BAB55291.1| 736|Homo sapiens protein ( Homo sapiens
cDNA FLJ14774 fis, clone NT2RP4000051, weakly similar to
SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
Length = 736
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AK027648-1|BAB55264.1| 804|Homo sapiens protein ( Homo sapiens
cDNA FLJ14742 fis, clone NT2RP3002650, highly similar to
Mus musculus growth suppressor 1L (Gros1) mRNA. ).
Length = 804
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AF097432-1|AAG31019.1| 736|Homo sapiens GROS1-L protein protein.
Length = 736
Score = 66.9 bits (156), Expect = 5e-11
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAGECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE---AFVNRSDIVYYFKRDTYEKMIL 117
P+ E M +N +Y++++ +E + R Y +R EK +L
Sbjct: 332 PNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
>AF097431-1|AAG31018.1| 363|Homo sapiens GROS1-S protein protein.
Length = 363
Score = 65.7 bits (153), Expect = 1e-10
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Frame = -2
Query: 578 GKDAYNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQ------QISSEFIITIANN 417
G Y++ ++ + + E A+++YF CRA CE D + +++ I ++
Sbjct: 212 GVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDH 271
Query: 416 VASLLHCQQQC-QDILKKFSYQSGIE-FLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMI 243
+L+C+Q C ++ S + E FL +YLQ +YY +Y A E TY++
Sbjct: 272 YIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAGECAKTYLLFF 331
Query: 242 PDAEDMIENKKFYSSLVDKE 183
P+ E M +N +Y++++ +E
Sbjct: 332 PNDEVMNQNLAYYAAMLGEE 351
>U47621-1|AAC51792.1| 437|Homo sapiens nucleolar autoantigen No55
protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>BC011701-1|AAH11701.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>BC007942-1|AAH07942.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>BC001047-1|AAH01047.1| 437|Homo sapiens synaptonemal complex
protein SC65 protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>AK222945-1|BAD96665.1| 437|Homo sapiens synaptonemal complex
protein SC65 variant protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>AJ250583-1|CAC16786.1| 437|Homo sapiens nucleolar protein No55
protein.
Length = 437
Score = 63.3 bits (147), Expect = 6e-10
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Frame = -2
Query: 566 YNKNDWEKTITNFEEAIKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
YN D+ + + E A+ +Y +V C A CE +Q +F IA+ A L C+
Sbjct: 215 YNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD 274
Query: 386 CQ-DILKKFSYQSGIEFLTDVLDYLQISYYYTKDYEGAAEAVSTYMVMIPDAEDMIENKK 210
C+ ++ +F+ + YLQ +YY D AA + ++YM+ P M +N
Sbjct: 275 CEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLV 334
Query: 209 FYSSL-----VDKEAFVNRSDIVYYFKRDTYEKMILNLXH 105
+Y +++E F R + + Y + + +L H
Sbjct: 335 YYRFHRARWGLEEEDFQPREEAMLYHNQTAELRELLEFTH 374
>U68233-1|AAB08107.1| 472|Homo sapiens farnesol receptor HRR-1
protein.
Length = 472
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 213 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 269
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK +FS + LT++ +++Q+ +TK G
Sbjct: 270 TNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPG 307
>BC130573-1|AAI30574.1| 476|Homo sapiens NR1H4 protein protein.
Length = 476
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 217 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 273
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK +FS + LT++ +++Q+ +TK G
Sbjct: 274 TNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPG 311
>AF478446-1|AAM53551.1| 486|Homo sapiens farnesoid-X-receptor beta
splice variant 2 protein.
Length = 486
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 227 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 283
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK +FS + LT++ +++Q+ +TK G
Sbjct: 284 TNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPG 321
>AF478445-1|AAM53550.1| 482|Homo sapiens farnesoid-X-receptor beta
splice variant 1 protein.
Length = 482
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 223 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 279
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK +FS + LT++ +++Q+ +TK G
Sbjct: 280 TNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPG 317
>AF384555-1|AAK60271.1| 476|Homo sapiens farnesol receptor protein.
Length = 476
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 217 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 273
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK +FS + LT++ +++Q+ +TK G
Sbjct: 274 TNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPG 311
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 305 YYYTKDYEGAAEAVSTYMVMIP-DAEDMIENKKFYSSLVDKEAFVNRSDIVYYFKRDTYE 129
YY D++ A +S +++ + D + M + K + +K D+ F D E
Sbjct: 1196 YYEMPDFDVAR--ISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253
Query: 128 KMILNLXHKDSDEGSFKXKDE 66
K++L + +SDE + ++E
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEE 1274
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 305 YYYTKDYEGAAEAVSTYMVMIP-DAEDMIENKKFYSSLVDKEAFVNRSDIVYYFKRDTYE 129
YY D++ A +S +++ + D + M + K + +K D+ F D E
Sbjct: 1196 YYEMPDFDVAR--ISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1253
Query: 128 KMILNLXHKDSDEGSFKXKDE 66
K++L + +SDE + ++E
Sbjct: 1254 KLVLRIRIMNSDENKMQEEEE 1274
>BC071778-1|AAH71778.1| 475|Homo sapiens NR1H4 protein protein.
Length = 475
Score = 29.9 bits (64), Expect = 6.8
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -2
Query: 560 KNDWEKTITNFEEA--IKDYFSVENNCRAECELQPDQQISSEFIITIANNVASLLHCQQQ 387
K ++T+ E ++ S +CR + EL PDQQ FI+ N Q+
Sbjct: 216 KQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRM---PQEI 272
Query: 386 CQDILK-KFSYQSGIEFLTDV-LDYLQISYYYTKDYEG 279
ILK + S + LT++ +++Q+ +TK G
Sbjct: 273 TNKILKEELSAEENFLILTEMATNHVQVLVEFTKKLPG 310
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,138,628
Number of Sequences: 237096
Number of extensions: 1191587
Number of successful extensions: 2742
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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