Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M02
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   1.4  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   3.2  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.3  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.9  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 447 KKSCIHLFGRKCFHKFFALHC 385
           K  C H+FG+ C  K+   HC
Sbjct: 124 KMPCGHIFGKNCLQKWLENHC 144


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 158  LIISCSL*NIITSNVYVCILYYSLI-----VFLCLSLYG 259
            L+  C+  N  TSN  +C   YSL+      F CLS++G
Sbjct: 1236 LVNHCNSCNSTTSNTRICEKCYSLVPRMSCTFCCLSIHG 1274


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 444 FFNSLMYKSKKKTLILDCPVPKYNLSKQLGPTKEKRLNRHFFYSVQYS 587
           F+ SL+  S K  L +      Y  SK+LGPT+    + +   SV YS
Sbjct: 192 FYTSLLSWSPKGDLAIGLAENIYLWSKELGPTRVLEESIYDVSSVAYS 239


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 523 FERLYLGTGQSKINVFFFDLYINELKKKLHTPLW 422
           +  L +GTG S +++  FDL  N L  +    LW
Sbjct: 198 YHTLSVGTGLSYVSLIIFDLPSNLLMTRADPRLW 231


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -1

Query: 667 WFSHC---SPTQYFFHQCFYT*IYIWC 596
           WF +C      ++FF +CFY  +Y  C
Sbjct: 129 WFKNCVGFRNHKFFFLECFYLNLYSIC 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,309
Number of Sequences: 5004
Number of extensions: 43980
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)