Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M02
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    27   9.1  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 575  CSIFSSSTPNVYLCIKALMEEILCXRTMTEPI 670
            C+I  S+ P+ Y C +A+    LC  T  EP+
Sbjct: 1172 CAIGQSTCPSGYSCQRAISGAQLCCTTNDEPV 1203


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 YLIISCSL*NIITSNVYVCILYYSLIVFLCLSLY 256
           YL IS    N++  N+Y+C +  S+++ +   +Y
Sbjct: 128 YLNISVEALNVVVRNLYICFIIKSVMLIILPYIY 161


>Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical
           protein T01G5.4 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 534 ALIVLRDYIWELDNLRLMFFFSICTSMN 451
           ALI+   YIW +  + L FF  + TS+N
Sbjct: 201 ALIISNFYIWFISTVCLAFFVLVFTSIN 228


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 450 NSLMYKSKKKTLILDCPVPK--YNLSKQLGPTKEKRLNRH 563
           N   Y S KK L ++CP+P    NL    G +K+   N++
Sbjct: 508 NKTRYDSLKKFLCVECPIPNQCVNLRTLAGKSKDGGENKN 547


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 450 NSLMYKSKKKTLILDCPVPK--YNLSKQLGPTKEKRLNRH 563
           N   Y S KK L ++CP+P    NL    G +K+   N++
Sbjct: 406 NKTRYDSLKKYLCVECPIPNQCVNLRTLAGKSKDGGENKN 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,655
Number of Sequences: 27780
Number of extensions: 241497
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)