Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_M02
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.16 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 381  SNNVKQKI-YGSIFVQRGVCSFFFNSLMYKSKKKTLILDCPVPKYNLSKQLGPTKEKRLN 557
            S NV+ ++ + + F  R   S   ++L   +  K + LD   PK N+  ++ P K +  +
Sbjct: 973  SKNVQGRVGFVTPFEHRHFISGIDSNLHVYAPLK-ISLDVNTPKGNMQWKIWPMKGEEKS 1031

Query: 558  RHFFYSVQYSVHPHQM 605
            R F YSV   V  H +
Sbjct: 1032 RLFHYSVVPFVSNHDI 1047


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 661 SHCSPTQYFFHQCFYT 614
           SHC   Q FF+Q + T
Sbjct: 192 SHCVVCQNFFYQIYAT 207


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 498 PVPKYNLSKQLGPTKEK 548
           PVP+ N S  L P +EK
Sbjct: 797 PVPQVNDSTILSPVREK 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,541
Number of Sequences: 438
Number of extensions: 3105
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)