Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L21
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    63   4e-11
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.3  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    27   3.3  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.7  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 33/98 (33%), Positives = 57/98 (58%)
 Frame = -3

Query: 542 GMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 363
           G S+++G  +GG+ GL +G++ T       ++R   ++N V ++G   G +LG++A  Y+
Sbjct: 88  GTSYLSGLAIGGLWGLNEGMKKTKDITST-RLRLNGILNGVTRRGPFVGNSLGVLALVYN 146

Query: 362 CIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 249
            I   + + R K    N+  A + TG +YKST GLR+M
Sbjct: 147 GINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAM 184


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 339 ASRQRRHSKHFHSSLNHWYHLQKHIWSSFNGSWCSYRSYISRDLHIT 199
           A +Q+ +++   + LNH   L ++  S+ N  WC+  S I + LH T
Sbjct: 207 AHKQKFYNETLPTLLNHMQVLNEYRVSNLNEIWCNSFS-IEKSLHDT 252


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 454 PT*PARVVALSPLYNPAIPPKPEPVIKD 537
           P+  A   +L   YNP  PP P P ++D
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPPAVED 201


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/80 (21%), Positives = 30/80 (37%)
 Frame = -3

Query: 548 IIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASF 369
           ++ +  M   G G ++ + KG+       +  K     VVN  +    +T   L + A+ 
Sbjct: 258 LVAVKVMRADGTGTVSDIIKGIEFAFKQSKKDKESIASVVNMSIGGDASTALDLAVNAAI 317

Query: 368 YSCIALGVTWLRDKEDTANT 309
              +   V    D ED   T
Sbjct: 318 AGGLFFAVAAGNDAEDACGT 337


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 515 LGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 363
           LG   GL++ L    +AG + K   T+ ++Y  +Q   +G ++    +FY+
Sbjct: 557 LGSPLGLFQMLNGKKIAGPIPKTNLTRSLSY-SEQSFDSGVSILSCQNFYN 606


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 372 VLLMHSPWGNLASRQRRHSKHFHSSLN 292
           +L +H PW   A+ ++   +H+ SS N
Sbjct: 500 LLYLHRPWFVRAATRKEEREHYKSSFN 526


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -2

Query: 399 RLHT--WNYCIVLLMHSPWGNLASRQRRHSKHFHSSLNHWYHLQKHIWSSF--NGSWCSY 232
           R+H+  W+  + L   SPWG         S H H S+    H     + SF  N SW   
Sbjct: 143 RIHSVAWSPLVSLPSSSPWGVCLFALGAESGHVHLSI--MSHSSTPFFKSFDLNCSWVVQ 200

Query: 231 RSYIS 217
            S+ S
Sbjct: 201 LSFSS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,600
Number of Sequences: 5004
Number of extensions: 50664
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)