Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L21
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   1.8  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    29   2.3  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical pr...    27   9.4  
X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein...    27   9.4  
M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein...    27   9.4  
M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein ( C.ele...    27   9.4  
M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein ( C.ele...    27   9.4  
D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein...    27   9.4  
AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    27   9.4  

>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 43/141 (30%), Positives = 64/141 (45%)
 Frame = -3

Query: 674 SANLSPYXNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGL 495
           S  ++PY   DP      QP+++ P+     +   +   AL  IG +     G+G   G 
Sbjct: 72  SRQMTPYVQMDPSMFASQQPQYIMPEGG--VAGKGKFEFALGHIGWAVGGAFGVGCARGA 129

Query: 494 YKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTA 315
              L        VGK   T++VN  MK G+      G I   YS + +G+  +R  ED  
Sbjct: 130 LGELMNPETRKMVGKPWMTRMVNATMKHGSGFAQPSGAIVFMYSALEIGLRSVR-AEDEL 188

Query: 314 NTFIAASTTGIIYKSTSGLRS 252
           N F A + TG IY+S  GL++
Sbjct: 189 NGFGAGALTGAIYRSPHGLKA 209


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 463 PARVVALSPLYNPAIPPKP--EPVIKDIPMMGRATFDLLAVEA 585
           PA VVA +P + PA  P P   P+I   P +  A+ + L V A
Sbjct: 98  PAPVVAAAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA 140


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 336 SRQRRHSKHFHSSLNHWYHLQKHI 265
           SR     + FHSS+ + YHLQ HI
Sbjct: 138 SRSPSPKRDFHSSMRNQYHLQAHI 161


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 431 VNYVMKQGTTTGCTLGIIASFYSCIALGVTWL 336
           +NY+  QG+TTG T+ +I  FY    L + WL
Sbjct: 267 INYMQFQGSTTGSTVSLI--FYPWDVLKLYWL 296


>Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical
           protein T08G5.10 protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein-2
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-2, complete cds.).
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-1, complete cds.).
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 216 C*CKTGSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCA 395
           C CK  +C+    TK  C    D S   C E  CC     K     G A   +C N +CA
Sbjct: 5   CDCKNQNCSCNTGTKD-C----DCSDAKCCEQYCCPTASEKKCCKSGCAGGCKCANCECA 59


>AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical
           protein C33E10.5 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 641 PHYIPRMQPEFLYPDDSHMASTARRSNVALP 549
           P+ IPR++P  L+P  S   S++ R    LP
Sbjct: 327 PNVIPRIEPAMLFPVSSSGPSSSERDISPLP 357


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 566 SNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGT--TTGC 393
           +++A  ++G +   G+GLG +AG   G      AGQ G         Y + QG    TG 
Sbjct: 25  ASLATSLLGGALGNGAGLGALAG--AGAAGAGAAGQAGGAIAQIGQLYQLAQGALQLTGT 82

Query: 392 TLGII 378
            +G++
Sbjct: 83  GVGVL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,311
Number of Sequences: 27780
Number of extensions: 289417
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)