Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L19
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   159   2e-40
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   155   4e-39
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   4.2  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   7.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.7  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  159 bits (387), Expect = 2e-40
 Identities = 80/155 (51%), Positives = 109/155 (70%), Gaps = 2/155 (1%)
 Frame = -2

Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
           MGIDI   H RK +R++  S+++              RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 371 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 198
           IS+S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 197 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 93
           E+LT DQLALRAPTG  TVL++G+++AREA RHFG
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG 155


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  155 bits (377), Expect = 4e-39
 Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
 Frame = -2

Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
           MGIDI   H +K +R++  S+++              RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 371 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 198
           IS+S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 197 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 93
           E+LT DQLALRAPTG  TVLV+G+++AREA RHFG
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG 155


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 287 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 174
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 186 SKNFSSSSQNACTSFFGNMKSSHRH 260
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +3

Query: 78  APGSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHR 257
           +P S +  +   +S S + +   + +S ST S  + S + SSSS+ A +S   +  SSH+
Sbjct: 349 SPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHK 407

Query: 258 HLRYLVQSHVICDCPHYHGNQTLTS 332
                  S        YH + +  S
Sbjct: 408 SSSSSKSSSAPVSSAFYHNSTSSRS 432


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 189 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 302
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 182 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPAT 84
           D++  + P G K  + Q ++  R A++H+  A+
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREAS 152


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 320 LIAVVVGTVTNDVRLYKI 267
           L+ +VV  +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 147 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 326
           L+A  ST S   K     S  +     F    K S    RYL Q   IC+ P  +   +L
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112

Query: 327 T 329
           +
Sbjct: 113 S 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,472
Number of Sequences: 5004
Number of extensions: 57672
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)