Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_L19
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 163 1e-40
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 159 1e-39
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 146 1e-35
01_06_0579 + 30379243-30379617 29 2.5
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 3.3
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 4.4
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 5.8
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 7.6
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 163 bits (395), Expect = 1e-40
Identities = 86/162 (53%), Positives = 112/162 (69%), Gaps = 7/162 (4%)
Frame = -2
Query: 551 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRP 375
MGID + ++K +RT +S+D+ RT + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 374 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 213
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 212 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 87
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPA
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPA 162
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRA 8
PG P +TKPYVR+KG EKAR R +
Sbjct: 163 PGVPHSNTKPYVRSKGRKFEKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 159 bits (387), Expect = 1e-39
Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Frame = -2
Query: 551 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRP 375
MGID + ++K +RT +S D+ RT + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 374 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 195
P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 194 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 87
LTFDQLALRAP G+ TVL++G +NAREAVRHFG A
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKA 155
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRA 8
PG P HTKPYVR+KG EKAR R +
Sbjct: 156 PGVPHSHTKPYVRSKGRKFEKARGRRNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 146 bits (355), Expect = 1e-35
Identities = 85/173 (49%), Positives = 109/173 (63%), Gaps = 18/173 (10%)
Frame = -2
Query: 551 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRP 375
MGID + ++K +RT KS D+ RT + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 374 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 195
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 194 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPA 87
LTFDQLALRAP G+ T VL++G +NAREAV+HFGPA
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPA 171
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRA 8
PG P +TKPYVR+KG EKAR R +
Sbjct: 172 PGVPHSNTKPYVRSKGRKFEKARGRRNS 199
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 272 CTVSRHL*LSPLPRQSNPHELASS 343
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 301 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 405
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 434 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 258
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 257 TVAALHVTEKARARILAAGGEI 192
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 204 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 302
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 190 LLLISWLFVLRLARRQYWYKVSEML 116
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,111
Number of Sequences: 37544
Number of extensions: 403651
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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