Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_L19
(663 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 185 1e-46
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 185 1e-46
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 185 1e-46
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 185 1e-46
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 183 6e-46
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 155 1e-37
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.69
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.69
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 6.4
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 6.4
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 6.4
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 185 bits (450), Expect = 1e-46
Identities = 95/163 (58%), Positives = 113/163 (69%)
Frame = -2
Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 371 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 192
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 191 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRSTAXSH 63
LTFDQLAL +P G TVL+ G R RE RHFG A T SH
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-GTPHSH 162
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 156 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 185 bits (450), Expect = 1e-46
Identities = 95/163 (58%), Positives = 113/163 (69%)
Frame = -2
Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 371 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 192
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 191 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRSTAXSH 63
LTFDQLAL +P G TVL+ G R RE RHFG A T SH
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-GTPHSH 162
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 156 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 185 bits (450), Expect = 1e-46
Identities = 95/163 (58%), Positives = 113/163 (69%)
Frame = -2
Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 371 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 192
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 191 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRSTAXSH 63
LTFDQLAL +P G TVL+ G R RE RHFG A T SH
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-GTPHSH 162
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 156 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 185 bits (450), Expect = 1e-46
Identities = 95/163 (58%), Positives = 113/163 (69%)
Frame = -2
Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 371 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 192
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 191 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRSTAXSH 63
LTFDQLAL +P G TVL+ G R RE RHFG A T SH
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-GTPHSH 162
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 156 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 183 bits (445), Expect = 6e-46
Identities = 94/163 (57%), Positives = 112/163 (68%)
Frame = -2
Query: 551 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 372
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 371 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 192
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 191 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRSTAXSH 63
LTFDQLAL +P G TVL+ G R RE RHFG A T SH
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-GTPHSH 162
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 156 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 155 bits (377), Expect = 1e-37
Identities = 77/125 (61%), Positives = 94/125 (75%)
Frame = -2
Query: 437 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 258
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 257 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPATRS 78
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAP-G 134
Query: 77 TAXSH 63
T SH
Sbjct: 135 TPHSH 139
Score = 36.3 bits (80), Expect = 0.098
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 85 PGAPRXHTKPYVRTKGH--EKARPSRRAN 5
PG P HTKPYVR+KG E+AR RRA+
Sbjct: 133 PGTPHSHTKPYVRSKGRKFERAR-GRRAS 160
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.69
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = -1
Query: 315 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 136
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 135 TRSAKCS 115
T S CS
Sbjct: 83 TSSTPCS 89
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.69
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = -1
Query: 315 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 136
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 135 TRSAKCS 115
T S CS
Sbjct: 83 TSSTPCS 89
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 225 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 347
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 225 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 347
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 225 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 347
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,871,197
Number of Sequences: 237096
Number of extensions: 2247289
Number of successful extensions: 4847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4847
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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