Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_L11
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical pr... 133 1e-31
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.0
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.0
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 29 3.0
U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q (ubi... 29 3.0
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 29 3.0
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 27 9.3
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 27 9.3
>Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical
protein R06C1.2 protein.
Length = 352
Score = 133 bits (322), Expect = 1e-31
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)
Frame = -2
Query: 676 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNETLWRTSMGQH 497
G PCW+RR VG++ A D+ ++ S + + + + N ++ E + ++ +T +GQ
Sbjct: 110 GKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRKSKQKTLIGQF 168
Query: 496 LDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICL 317
LD + N+ SSFT DR P+ + L++++ + + S + +
Sbjct: 169 LDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL--AYHGSVKKVAY 223
Query: 316 EIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR-------TVF 158
+IG +FQ QDDF+D +GD TGK+GTDIQ+ KCTWLAV+ALQ+ + F
Sbjct: 224 QIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTPEKWGAKLIEEF 283
Query: 157 KACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIEXIP 17
K +GS +P VE+IKR+Y++L L Q ++ EK I + I IP
Sbjct: 284 KTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 291 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 145
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 291 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 145
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 291 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 145
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234
>U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 373 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 227
+LA+ D K+++ A + +G FQ+ DD +D + GK V D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 291 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 145
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 124 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIEXI 20
+ER +R+ +DLHL I K DNI++ IE +
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 124 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIEXI 20
+ER +R+ +DLHL I K DNI++ IE +
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,704
Number of Sequences: 27780
Number of extensions: 303265
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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