Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L10
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.7  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 264 SSYKELRSKNSPDFETIFIGVLI*A*CYINHSLPQSMG-YLTLKE 395
           ++YK+L+  N    E I + V I    Y  + LP+ MG +++++E
Sbjct: 95  NNYKKLQYYNINYIEQIPVPVPIPVPVYYGNFLPRPMGPWISIQE 139


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 1   KIKXIARVSHSAGQWSSLALGEPPA*SSTP 90
           KIK +  V  S     S++L  PP    TP
Sbjct: 116 KIKGLCEVPESRDGPPSVSLSSPPREPGTP 145


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 216 KSYVTDVFSRLGYP 257
           +S   D++SR+G+P
Sbjct: 358 QSQTIDIYSRIGFP 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,255
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)