Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_L06
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 198 5e-52
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 106 3e-24
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 102 4e-23
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 99 3e-22
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 97 2e-21
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 72 8e-14
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 71 1e-13
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 32 0.078
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 30 0.24
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 9.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.0
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.0
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 198 bits (483), Expect = 5e-52
Identities = 93/177 (52%), Positives = 132/177 (74%), Gaps = 1/177 (0%)
Frame = -3
Query: 625 KSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYI 446
K+V KLQ +KI ++D+HV +AFAGL ADARILI++A++E Q+HKL + DPV++EY+
Sbjct: 49 KNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYL 108
Query: 445 TRYIAGLKQKYTQSNGRRPFGISCLIGGFDY-DGSPHLFQTEPSGIYYEWKANATGRSAK 269
TRY+AG++QKYTQS G RPFG+S LI GFD D +P ++QTEP+GIY WKA A GR++K
Sbjct: 109 TRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASK 168
Query: 268 TVREFLEKNYTADEVATENGAVKLAIRALLEVVQSGQKNLEIAVMRRGQPMQMLD*D 98
RE+LEKN+ E + + + LA+ +LLEVVQ+ N+E+A+M G+ ++ L D
Sbjct: 169 AAREYLEKNW--KEGLSRDETIHLAVSSLLEVVQTASGNIELAIMDPGKDVEFLHSD 223
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 106 bits (254), Expect = 3e-24
Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 4/168 (2%)
Frame = -3
Query: 625 KSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQS--HKLTVEDPVTLE 452
K ++L ++ K+C + + M ++G+ D R+L+++++ Q+ K+ E P T +
Sbjct: 50 KPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-K 108
Query: 451 YITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSA 272
+ + IA + Q+ TQS G RPFG+S L+ G D G P L+Q +PSG Y+ WKA A G+S+
Sbjct: 109 ILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKG-PSLYQVDPSGTYFAWKATAIGKSS 167
Query: 271 KTVREFLEKNYTADEVATENGAVKLAIRALLEVVQS--GQKNLEIAVM 134
+ FLEK Y DE+ ++ AV AI AL E + + N+EIAV+
Sbjct: 168 TAAKTFLEKRYN-DELELDD-AVHTAILALKETFEGELTEDNIEIAVV 213
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 102 bits (245), Expect = 4e-23
Identities = 55/149 (36%), Positives = 86/149 (57%)
Frame = -3
Query: 610 LQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIA 431
L++E + K+ + D+++ A AGLTADA ILIN A+ Q + T + + E + R +
Sbjct: 56 LEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVC 115
Query: 430 GLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFL 251
LKQ YTQ G RPFG+S L G+D+ LFQ+ PSG Y W+AN+ G ++ +V+ +
Sbjct: 116 DLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLM 175
Query: 250 EKNYTADEVATENGAVKLAIRALLEVVQS 164
+ Y D E A +A++ L + + S
Sbjct: 176 RQEYKDDINLDEASA--MAVKFLSKTLDS 202
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 99 bits (238), Expect = 3e-22
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Frame = -3
Query: 589 RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 410
+K+ +DDH+ +A AGL DAR+L N + E S K P+ + + +A Q T
Sbjct: 61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINT 120
Query: 409 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTAD 230
Q GRRP+G+ L+ G+D G PHL + +PSG+ E+ + G +++ R ++E+N
Sbjct: 121 QEYGRRPYGVGFLVIGYDESG-PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTF 179
Query: 229 EVATENGAVKLAIRALLEVVQSGQ----KNLEIAVMRRGQPMQMLD*DNETRRW 80
++ + A+RAL + + Q +N+ I+V+ + + + D N+T+ W
Sbjct: 180 PDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYD-QNDTKEW 232
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 96.7 bits (230), Expect = 2e-21
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Frame = -3
Query: 610 LQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIA 431
L E +V K+ +D H+ A +GLTADAR +I A+++ Q+H+ T ++P +E T+ I
Sbjct: 58 LMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSIC 117
Query: 430 GLKQKYTQSNG------RRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAK 269
L ++ + RPFG++ LI G D G P L+ +EPSG Y+ ++A A G ++
Sbjct: 118 DLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG-PQLYHSEPSGTYFRYEAKAIGSGSE 176
Query: 268 TVREFLEKNYTADEVATENGAVKLAIRALLEVVQS--GQKNLEIA 140
+ L K + D E A L ++ L +V++ KN+++A
Sbjct: 177 PAKSELVKEFHKDMTLEE--AEVLILKVLRQVMEEKLDSKNVQLA 219
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 71.7 bits (168), Expect = 8e-14
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
Frame = -3
Query: 613 KLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYI 434
KL + TV+ + + + G ADAR ++RA+ E + P+ + + + +
Sbjct: 57 KLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRM 116
Query: 433 AGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREF 254
A + Q TQ RP G++ + D + P LF+ +P+G Y +KA + G +
Sbjct: 117 ANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINW 176
Query: 253 LEKNYTADEVATE-NGAVKLAIRALLEVVQSGQKN--LEIAVMRRGQPMQML 107
LEK + D + + V+ I+AL+ + + K+ L+I V+ +P ++L
Sbjct: 177 LEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVL 228
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 70.9 bits (166), Expect = 1e-13
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Frame = -3
Query: 616 AKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRY 437
+KL + R +I +D H+ +A G D + ++ RA+ E S + P+ I
Sbjct: 55 SKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADR 114
Query: 436 IAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVRE 257
+ Q +T + RPFG+ + +D +G PHL+ EP+G+Y+ + A G+ + R
Sbjct: 115 LGNYVQLFTCYSSVRPFGVMSFVATYDSEG-PHLYMVEPNGVYWGYNGAAAGKGRQVARN 173
Query: 256 FLEK-NYTADEVATENGAVKLAIRAL 182
LEK N+++ ++ AVK A R L
Sbjct: 174 ELEKLNFSSLKM---KDAVKEAARIL 196
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 31.9 bits (69), Expect = 0.078
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = -3
Query: 568 DHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRR- 392
D +V+ +G ADA L+ R Q + E ++ + + L G+R
Sbjct: 52 DDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLY------GKRF 105
Query: 391 -PFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 248
P+ + + G D +G ++ +P G Y A G +A + FL+
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLD 154
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 30.3 bits (65), Expect = 0.24
Identities = 14/70 (20%), Positives = 36/70 (51%)
Frame = -3
Query: 622 SVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYIT 443
S L +TV+K+ ++ +++ AG AD + +EC+ H+L ++ +++ +
Sbjct: 82 SAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAAS 141
Query: 442 RYIAGLKQKY 413
+ ++ + Y
Sbjct: 142 KILSNITYSY 151
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 513 FINIRASA-VNPANAITT*S--SKRHIFLTVRSSCNLATDF 626
F+N SA +NP N + T SK+ +FLT SS ++ DF
Sbjct: 261 FMNTDISADINPINVLITALLISKKVLFLTKTSSASVLADF 301
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.1
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Frame = +3
Query: 348 PS*SNPPIKHEIPNGRRPLL*VYFCLRP--------AMYLVIYS-NVTGSSTVNLCD*HS 500
P+ P +IPN R +L + C P MYL S N T S + L HS
Sbjct: 375 PNFPEPKFFEDIPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHS 434
Query: 501 ICARFINIR-ASAVNPANAITT*SSKR 578
IN+ A A+ IT + KR
Sbjct: 435 FLNIVINLNPALALKSYTIITLLNGKR 461
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 350 IIVESSYQTRNTKWSTTIALSIFLFETCYVSCNILQCYWILD 475
II S Y+T N W++TI ++CN+LQ + +D
Sbjct: 549 IIYPSLYKTANEHWNSTIQA---------IACNVLQIFVDMD 581
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 413 IFLFETCYVSCNILQC 460
I LF+TCY+ C + C
Sbjct: 567 IVLFDTCYMVCTYIVC 582
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 346 SPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 233
SP LF I + NAT S +V FL+K T+
Sbjct: 247 SPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQKTSTS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,385
Number of Sequences: 5004
Number of extensions: 50630
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -