Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.3  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   1.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   5.4  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   7.1  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 606 FGRPMTTENTAK--TPNSKFTQ 547
           FG+P TTE+T K   PNS FT+
Sbjct: 300 FGKPATTEDTNKPTAPNSAFTK 321


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 532 IEICLPDFICNNSYKNADI*TCFI-VTKHAE 443
           ++IC    IC+N YKNA    C I  T+H E
Sbjct: 168 LKICTDVLICSNDYKNALWILCLIKETQHNE 198


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +2

Query: 227 STSLLYSSFKSITALVGVSILKIK*LASLWVIPCAVDL*GIGRNPKFSMFL---MIPPQS 397
           S + L +S  S +ALV +  L +      WV  C ++      N +F++ +   + P + 
Sbjct: 522 SDAFLTNSNSSESALVHMQKLNLPDFTPSWVKRCVIETFAKFPNDRFNVIVKPALNPAER 581

Query: 398 ---NIACEILFNEVFNSGFGMFRNN 463
               I C    NE F +G G    N
Sbjct: 582 MTVRICCHDCINEYFTAGPGFTFGN 606


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 59  EMTSLXKSEQEKWYCFFN 6
           E+  L K E  KW C FN
Sbjct: 108 EIVDLSKEELSKWICLFN 125


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 327 HGMTHKEANYFIFKIDTPTKAVID 256
           HG+T KE    I+KI T T A +D
Sbjct: 177 HGITEKEELQHIYKILTLTPASLD 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,128
Number of Sequences: 5004
Number of extensions: 48811
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)